Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0901 ATGGGTGGTCAGGGTCGTGGAGAATATGGGGGGTTCAATGCTCATCAGCAGCAACAGCAGCAGCAACCGCCGTTGTCTGGTCAGAAACGAGGGTTTCCGTTCTCTGGGCGCGAAGGTTCGCCCGATCGTTTTGATGGTGGAAGTTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGTACAGCCACTGAAGAAAATATTCGGCCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTGATCAAAGATAAAAAAACTGGACAGCATCAAGGTTGTTGTTTCATAAAGTATGCTACATCTGAAGATGCTGACCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTATTGGTCCAATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTAGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAGGAAATATTCTCAAAATATGGGCGCGTAGAAGATGTTTATCTTATGCGTGATGAGAGGAAACAAAGCCGTGGTTGTGGTTTTGTGAAGTACTTGCATCGAGATATGGCACTGGCTGCTATAAATGCACTTAATGGAATCTATACAATGAGAGGTTGTGATCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGAGCTCCAGGATCAGGTCCTAAATTTGACCCACCAGCCGCAAGATTTCCACCCAATATTAGTGTTCCTATGGGTGATCATATGCCTCCCCTGAATGCATGGCGTCCAATGCATCCACCAAATATGGGACCATCCTCTAATGCTGATCTCCATGGTATGGGGCCTCCATGGCTTCCAAGATCTGGTGACACTGTATTGCCAATAAATGCAGGTGGTCCTATGACTGGCATGGGAGGCCCCATAGATGGCCGCTTTCAGGTTGAATCCCAGTCATCAATGGTACAACAGAATTTCAACCAGTCTGTGCCGCAAATTTCACCAGTCAAGCAACAAATATCACCATTACAAAATCCTTCTCAGTCATCTCAGGAGTTGCCACCTGTTCACCAGTTGTACCCTCAAGCACCGATGCCCTACTCCCAAACGTCATCACAATCATCTCTTAGTCTGGTTGGCCAGCCACAACTTCCTTTCTCTGCTGGTCAGCATGTACTTGGCACAAGTGGACACTTTCCAACTTCTCATCACCAAAATCAGCAGAGTGCTTTGCCTGCTTCGAATCCTCGGGTACCTCATGATAGCAGCTTCCAACCTAATGCAGCATTTACCACTCCTAAACAACAGCAAGTTCCTTCGTCTGTGCCGCTTCAGCCATTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAAAAACAGACTTTACAAGCAAGTCTTCATTCGTCCCAGCAGGCATTCTCCCAGCTTCAACAACAAGTACAGATGATGCAACCATCTAGTCAAGCATCAACAATGCAGCAAAATGCAACAACGGCTAACCAACAGCAGGTTCAATGGGCCGGGGCTATACAACAAGCCAGCAAATCTGCAGCTGCACACACTGGAGATGTGCCTTCATCCACATCTGCTACTACTGCTGCAGCAGGGATAGGCCAGAACATAGCTCTTGTTAAATGTGATTGGACAGAGCATTTATCTCCTGAGGGCTTCAAGTACTACTACAATAGTGTGACTGGTGAAAGTCGGTGGGAGAAACCGGAGGAGTTGACATTATCTGAACAGCAAAAGCAACAGCAAAGGCATACTCAGTCACAATCTTCAATGATATCTTCCCAGCAAGTTCCACAAATGCAACAGGCTCAGGCTCAGGCTCAGAGTCACTTCCAAGGACAGATTCTCCAGCAGCAACAAATGCAGCAGCCTTCTTTGTCTTCTTCGGCATATGGAGTCACGGGTCATCAAAATGTTCAGGTAGTTGAAAATTACAAACAGTTTCAGGCATCAGCTATTTCTGCTGGTGATCCTGGACACTACTCACAGGGTATTCATACTACACAAGATTGGATGTGGAAAAACAAGCCAGCAGGAAATTAA 2091 0.4644 MGGQGRGEYGGFNAHQQQQQQQPPLSGQKRGFPFSGREGSPDRFDGGSFAKLFVGSVPRTATEENIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEDADQAIRALHNQHTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDERKQSRGCGFVKYLHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGAPGSGPKFDPPAARFPPNISVPMGDHMPPLNAWRPMHPPNMGPSSNADLHGMGPPWLPRSGDTVLPINAGGPMTGMGGPIDGRFQVESQSSMVQQNFNQSVPQISPVKQQISPLQNPSQSSQELPPVHQLYPQAPMPYSQTSSQSSLSLVGQPQLPFSAGQHVLGTSGHFPTSHHQNQQSALPASNPRVPHDSSFQPNAAFTTPKQQQVPSSVPLQPFQPLQQSPSQLAQMLSQQKQTLQASLHSSQQAFSQLQQQVQMMQPSSQASTMQQNATTANQQQVQWAGAIQQASKSAAAHTGDVPSSTSATTAAAGIGQNIALVKCDWTEHLSPEGFKYYYNSVTGESRWEKPEELTLSEQQKQQQRHTQSQSSMISSQQVPQMQQAQAQAQSHFQGQILQQQQMQQPSLSSSAYGVTGHQNVQVVENYKQFQASAISAGDPGHYSQGIHTTQDWMWKNKPAGN* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0901 696 MobiDBLite consensus disorder prediction 369 468 - -
Lan12g0901 696 MobiDBLite consensus disorder prediction 591 624 - -
Lan12g0901 696 ProSiteProfiles WW/rsp5/WWP domain profile. 560 587 IPR001202 GO:0005515
Lan12g0901 696 MobiDBLite consensus disorder prediction 343 362 - -
Lan12g0901 696 SMART rrm1_1 142 217 IPR000504 GO:0003723
Lan12g0901 696 SMART rrm1_1 51 127 IPR000504 GO:0003723
Lan12g0901 696 PANTHER TRANSFORMER-2-RELATED 21 654 - -
Lan12g0901 696 MobiDBLite consensus disorder prediction 584 624 - -
Lan12g0901 696 MobiDBLite consensus disorder prediction 221 285 - -
Lan12g0901 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 131 IPR000504 GO:0003723
Lan12g0901 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 209 IPR000504 GO:0003723
Lan12g0901 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 114 IPR000504 GO:0003723
Lan12g0901 696 SUPERFAMILY WW domain 559 590 IPR036020 GO:0005515
Lan12g0901 696 MobiDBLite consensus disorder prediction 11 28 - -
Lan12g0901 696 Gene3D - 556 603 - -
Lan12g0901 696 SMART ww_5 555 587 IPR001202 GO:0005515
Lan12g0901 696 ProSitePatterns WW/rsp5/WWP domain signature. 560 585 IPR001202 GO:0005515
Lan12g0901 696 Gene3D - 47 136 IPR012677 -
Lan12g0901 696 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 21 654 - -
Lan12g0901 696 CDD WW 557 587 IPR001202 GO:0005515
Lan12g0901 696 SUPERFAMILY RNA-binding domain, RBD 16 135 IPR035979 GO:0003676
Lan12g0901 696 MobiDBLite consensus disorder prediction 343 468 - -
Lan12g0901 696 MobiDBLite consensus disorder prediction 1 45 - -
Lan12g0901 696 Pfam WW domain 558 585 IPR001202 GO:0005515
Lan12g0901 696 Gene3D - 137 229 IPR012677 -
Lan12g0901 696 SUPERFAMILY RNA-binding domain, RBD 141 239 IPR035979 GO:0003676
Lan12g0901 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 221 IPR000504 GO:0003723
Lan12g0901 696 CDD RRM2_FCA 142 221 IPR034645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0901 Lan-Chr12 16012861 16022767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0901 52 244 Eukaryotic Initiation Factors Gene Family AT2G23350 25.628 1.88e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0901 - - gmx:100798390 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0901 12 16012861 16022767 Lan12g0901 12 16012861 16022767 ECH