Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0900 ATGAATGAAATAAAAGCAATGGAGGAAAAGAAAAACAAGGAAGAACTGAACCCCATGGCAAATTCTGTTGCAGCACCATTTTCTGAAGAGATTCCAAACATGACCATGAACAATAACAGTTTCATTTTCCCTTTCTCATCCACCACCACCACCACCATCTTTGATATGATGCCACCAGCACCTTCAAAAGCTTCTTCTTCATCGTTTGATGGTGGATTCATGGATTTGCTTGCTGTCCACGATTACAACCCTTTCTTATTTGATTGCATCACCACCACCACCACTACAACCACCACTCAAATCGACCATTACCCTCTTCCGTCGCAGGTCGACGGCTCCGAGGTGTTGAACACTCCGGCGTCACCCAACTCTACTTCAATTTCTTCGTCGTCGAATGAAGCCACTGTTGTTGATGCCAATAATATCAATGAATATCATAGTGGTAAAGCAGAGGATGAAGATGGTGATGGAGGCAAAGGACATGAACAAGATCAACACCGCAAAACTAAGAAACAGCTGAAACCAAAAAAGAAGAAGCAAAAGAAGCAAAGAGAACCAAGATTTGCTTTCATGACAAAAAGTGAAGTGGATCAACTAGATGATGGCTATAGATGGCGCAAGTATGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTATTACCGTTGCACCACCGCGGGTTGCGGCGTGAAGAAGCGGGTGGAGCGATCTTCTGAGGACCCTACCACCGTAGTCACCACCTACGAAGGGCAACACACTCACCCTTGTCCCGCCACGTCACGTGCTTCACTGAGCTTCATGCAATATGGTAATGGTGGTTCTCTTGGTTCTCACCACTTTATGCTTCCACACCATCAACAACAACAGCAACAGTTTCATCAAGCTTTTACACGTGACTCAACAACCCCACCTTTGAACACTACTAGTGACTTTGTCAATTCCTCATCGTTTAATCCCTTCTCTCAAGATCAACAGGATCATCATCAAAGTTTTGTACCTTCGAGGATGACGGTGTTCAGGGACAATGGGCTTCTTCAGGATATTGTGCCAACCCAGATGAGGAATGAGAAGAACGAAGATGAGTAG 1092 0.4496 MNEIKAMEEKKNKEELNPMANSVAAPFSEEIPNMTMNNNSFIFPFSSTTTTTIFDMMPPAPSKASSSSFDGGFMDLLAVHDYNPFLFDCITTTTTTTTTQIDHYPLPSQVDGSEVLNTPASPNSTSISSSSNEATVVDANNINEYHSGKAEDEDGDGGKGHEQDQHRKTKKQLKPKKKKQKKQREPRFAFMTKSEVDQLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSEDPTTVVTTYEGQHTHPCPATSRASLSFMQYGNGGSLGSHHFMLPHHQQQQQQFHQAFTRDSTTPPLNTTSDFVNSSSFNPFSQDQQDHHQSFVPSRMTVFRDNGLLQDIVPTQMRNEKNEDE* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0900 363 SMART WRKY_cls 199 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan12g0900 363 Pfam WRKY DNA -binding domain 200 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan12g0900 363 MobiDBLite consensus disorder prediction 303 331 - -
Lan12g0900 363 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 353 IPR044810 GO:0003700
Lan12g0900 363 ProSiteProfiles WRKY domain profile. 194 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan12g0900 363 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 72 353 - -
Lan12g0900 363 MobiDBLite consensus disorder prediction 146 188 - -
Lan12g0900 363 MobiDBLite consensus disorder prediction 102 134 - -
Lan12g0900 363 Gene3D WRKY domain 183 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan12g0900 363 MobiDBLite consensus disorder prediction 170 184 - -
Lan12g0900 363 SUPERFAMILY WRKY DNA-binding domain 191 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan12g0900 363 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0900 Lan-Chr12 16004062 16005961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0900 169 359 WRKY Transcription Factor Family AT2G47260 52.792 3.17e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan12g0900 WRKY 8.7e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0900 - - gmx:100808190 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0900 12 16004062 16005961 Lan12g0900 12 16004062 16005961 ECH