Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0899 ATGGCCTCACCATCCGTGATATCAAACCCAGTAACGAACACGGATCGGTCACGTGACTCAAAGAGAAGGAAGAAGAATAAATCCCAGCTAAGACACCAACAACAACATTCAAATAGCCCCACCAAATGGAAATCCCAAGAACAACAACAAATCTACTCCTCCAAGCTCCACAAAGCCTTAACCACATCATCCCCTCCACGTGGCGGCAAAGCAGTGCGTGAAGCCGCCGATAGAGTCCTCGCCGCCACGGCGAAGGGTAGGACCCGGTGGAGCCGGGCCATCCTAACGAATAGGCTCAAACTCAAGTTCAGAAAGCAAAGGAACAAGAAACAGAGGATGATCGCGGCAGCAACCGGAATTAGCCGGTGTAAGAAGCCACGTGTGAGCGTTTTAAAGCTTAAGGGGAAAGGATTGCCGTCTATGCAAAGGAAAGTGAGGTTCCTAGGAGGATTAGTTCCCGGTTGCCGGAAAGAGCCTTTACCGGTGATTCTAGAAGAAACTATCGATTATATACCTGCGCTTGAGATGCAGGTTCGAGCAATGACCGCTCTCTTTAATCTTCTTTCTTCTTCCGGTGACGCTGCATCCGCATCAAACTCCGCACCACCTAGCTGA 615 0.5008 MASPSVISNPVTNTDRSRDSKRRKKNKSQLRHQQQHSNSPTKWKSQEQQQIYSSKLHKALTTSSPPRGGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQRNKKQRMIAAATGISRCKKPRVSVLKLKGKGLPSMQRKVRFLGGLVPGCRKEPLPVILEETIDYIPALEMQVRAMTALFNLLSSSGDAASASNSAPPS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0899 204 CDD bHLH_AtIBH1_like 130 184 IPR044549 GO:0006355
Lan12g0899 204 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 7 200 IPR044660 GO:0006355
Lan12g0899 204 MobiDBLite consensus disorder prediction 1 52 - -
Lan12g0899 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 190 IPR036638 GO:0046983
Lan12g0899 204 MobiDBLite consensus disorder prediction 32 52 - -
Lan12g0899 204 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 7 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0899 Lan-Chr12 15984481 15985614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0899 39 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 55.152 1.64e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0899 - - gmx:100803765 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0899 12 15984481 15985614 Lan12g0899 12 15984481 15985614 ECH
Lan12g0899 12 15984481 15985614 Lan19g0815 19 14653987 14654821 PCT
Lan12g0899 12 15984481 15985614 Lan16g0222 16 1749073 1749981 PCT
Lan19g0815 19 14653987 14654821 Lan12g0899 12 15984481 15985614 PCT
Lan16g0222 16 1749073 1749981 Lan12g0899 12 15984481 15985614 PCT