Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0885 ATGGGAAGAGCTCCTTGCTGTGAGAAAGTAGGGTTAAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGATTATATCCAAGAACATGGTGAAGGATCATGGAGGTCCTTGCCCAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGCAGACTGAGGTGGATCAACTACTTGAGATCAGATGTGAAGAGAGGAAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTCATAGCAGGAAATTTACCGGGAAGAACCGATAATGAGATAAAGAATTACTGGAACTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAATCTTTGAATGAATCACTTCCTTCCATTGAGATGGCTGTAGCTGCTATATCTAAGAGAAGACCAGTGGTTCGACCACCCATGCAAGACAACAATAACAACAAAGGGAACACAAGCGAAGTGGTGCTTCAACCAATGCCTAAAAGATCAAAACCAACAACTTCACAAAGTAATTTTAATGCATCTTGGAGCCAAATGCATCACTGTGGAGAAGACATAAAAGGCAACAATATAGAGGGCAACACAAATGACAGTATAATATTAGGGTCCTCATCCTCATGCCCTAGCATGAATGAAAGTGTTGAGGGAGCCTTGGCACCATATGAATGGCTAGATGATGAAATTATGAAACTAAGTTACATGTTTGAAAGTGGTGGAATGATGATAACCAATGAAGAAGAGGGTAATAGAAATAATAACTGTGGATTATCATTGGGTGAGTGGAATAACAATACTAGTTCTTCCTCAGTGAATTATGTGTATGATTATCAGTGGCCTGATATGCATTTGGCAGGAAGTAGTGTTCATCAATCCTATAATCAGTGGAATTTTTGTGAAGAACAAGACCAGTTATGGGATACTAGTAGCAGTGGTGAACTATATGGCTTTCATCATTGA 978 0.3978 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGNLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPSIEMAVAAISKRRPVVRPPMQDNNNNKGNTSEVVLQPMPKRSKPTTSQSNFNASWSQMHHCGEDIKGNNIEGNTNDSIILGSSSSCPSMNESVEGALAPYEWLDDEIMKLSYMFESGGMMITNEEEGNRNNNCGLSLGEWNNNTSSSSVNYVYDYQWPDMHLAGSSVHQSYNQWNFCEEQDQLWDTSSSGELYGFHH* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0885 325 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan12g0885 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan12g0885 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan12g0885 325 CDD SANT 16 61 IPR001005 -
Lan12g0885 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan12g0885 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 262 - -
Lan12g0885 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan12g0885 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan12g0885 325 CDD SANT 71 112 IPR001005 -
Lan12g0885 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan12g0885 325 Gene3D - 13 66 - -
Lan12g0885 325 Gene3D - 71 116 - -
Lan12g0885 325 PANTHER MYB TRANSCRIPTION FACTOR 2 262 - -
Lan12g0885 325 SMART sant 66 114 IPR001005 -
Lan12g0885 325 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0885 Lan-Chr12 15889613 15893111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0885 1 165 MYB Transcription Factor Family AT2G47460 66.667 2.75e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan12g0885 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0885 K09422 - gmx:100805532 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0885 12 15889613 15893111 Lan12g0885 12 15889613 15893111 ECH