Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0883 ATGTCGCTCAGGCCAAATGAGAGAACCGAGGGTCGCCGCAACCGTTACAAGGTCGCCGTCGACGCCGAAGAAGGCCGTCGCAGAAGAGAGGATAACATGGTTGAGATCCGCAAGAACAAGCGCGAAGAGAGCCTTCAGAAGAAGCGTCGCGAAGGCTTTGCAGCTCAGCAACAGTTAGCTACTCCTTCTAACAACCTCGACAAAAAGTTAGAGACTCTTCCTGCATTGGTTGCTGCTGTTTGGTCAGATGATAATGCTACGCAACTGGAAGCCACCACACAATTTCGAAAGTTGCTTTCAATTGAGCGGAGTCCTCCGATCGAGGAAGTTATTCAGTCTGGTGTTGTTCCTCGTTTTGTTCAGCTTCTCAGTAGGGAGGACTTCCCTCAAGTCCAGTTTGAGGCTGCATGGGCTCTCACAAACATTGCATCTGGAACTTCTGAGAACACAAAGGTGGTGATTGATCACGGAGCAGTTCCCATATTTGTGAAGCTACTCAGTTCTGCTAGTGATGATGTTCGGGAGCAGGCTGTGTGGGCATTGGGAAATGTTGCTGGTGACTCTCCTAGGTGTCGGGATCTAGTTCTTGGCCAAGGTGCCCTTATTCCACTATTGGCCCAGTTGAATGAGCATGCAAAACTATCAATGCTGAGAAATGCCACATGGACATTATCAAACTTTTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAAGTGAGGCCAGCACTTCCAGCTCTTGAGCGTTTAGTTTTTTCCAATGATGAAGAAGTTCTGACAGATGCATGCTGGGCACTATCATATCTTTCCGATGGCACAAATGATAAAATTCAAGCCGTTATTGAGACAGGTGTATGTACCCGCTTGGTGCAGCTCCTTCTGCACCCGTCTCCCTCAGTGCTGATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACCGGAGATGATATGCAGACTCAGAGTATTATCAATCATGGTGCACTCCCAAGCCTTTTGGGCTTGTTGACTCACAATCATAAAAAAAGCATTAAAAAGGAAGCTTGCTGGACTATATCAAATATTACAGCTGGAAACAAGGAACAAATACAGTCTGTTATTGAAGCTGGCCTTATTGGTCCTCTTGTCATTCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCAAATGCCACATCTGGTGGAAGTCATGAGCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGAGCTACTTATTTGCCCCGACCCAAGAATTATCACCGTCTGTTTGGAAGGCCTGGAGAATATTCTGAAGGTGGGAGAAGCAGATAAGAACCTAGGTAATACGGGAGATGTCAACTTGTATGCCCAAATGGTAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTACAAAGTCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATGCTTGAAACGTACTGGTTGGAAGATGAAGATGACGAGGCACTACCTCCTGGTAATGAAGCTCAGGCTGGTTTCAACTTTGGAGGCCACGAGCTCCCAGTCCCATCTGGTGGATTCAACTTTAGCTGA 1590 0.4635 MSLRPNERTEGRRNRYKVAVDAEEGRRRREDNMVEIRKNKREESLQKKRREGFAAQQQLATPSNNLDKKLETLPALVAAVWSDDNATQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQLLSREDFPQVQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSASDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIETGVCTRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPSLLGLLTHNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLIGPLVILLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCELLICPDPRIITVCLEGLENILKVGEADKNLGNTGDVNLYAQMVDDAEGLEKIENLQSHDNNEIYEKAVKMLETYWLEDEDDEALPPGNEAQAGFNFGGHELPVPSGGFNFS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0883 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lan12g0883 529 PANTHER IMPORTIN ALPHA 2 519 - -
Lan12g0883 529 MobiDBLite consensus disorder prediction 1 57 - -
Lan12g0883 529 Pfam Importin beta binding domain 12 93 IPR002652 GO:0006606|GO:0061608
Lan12g0883 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Lan12g0883 529 MobiDBLite consensus disorder prediction 1 50 - -
Lan12g0883 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Lan12g0883 529 Gene3D - 71 494 IPR011989 -
Lan12g0883 529 SMART arm_5 400 440 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 314 355 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 103 144 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 231 270 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 272 312 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 187 229 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 357 397 IPR000225 GO:0005515
Lan12g0883 529 SMART arm_5 146 186 IPR000225 GO:0005515
Lan12g0883 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 104 144 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 146 185 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 273 311 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 188 229 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 315 355 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 357 396 IPR000225 GO:0005515
Lan12g0883 529 Pfam Armadillo/beta-catenin-like repeat 242 269 IPR000225 GO:0005515
Lan12g0883 529 Gene3D - 11 50 IPR036975 GO:0006606
Lan12g0883 529 Pfam Atypical Arm repeat 455 502 IPR032413 -
Lan12g0883 529 PANTHER IMPORTIN SUBUNIT ALPHA 2 519 - -
Lan12g0883 529 SUPERFAMILY ARM repeat 5 499 IPR016024 -
Lan12g0883 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 368 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0883 Lan-Chr12 15876981 15881492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0883 129 389 U-box Gene Family AT3G46510 24.904 4.11e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0883 K15042 - gmx:100808498 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0883 12 15876981 15881492 Lan12g0883 12 15876981 15881492 ECH
Lan12g0883 12 15876981 15881492 Lan4g1304 4 21847451 21852525 ECH
Lan12g0883 12 15876981 15881492 Lan4g0636 4 8705247 8709281 PCT
Lan12g0883 12 15876981 15881492 Lan16g0193 16 1516623 1521012 PCT
Lan12g0883 12 15876981 15881492 Lan19g0867 19 16146329 16150307 PCT
Lan4g0636 4 8705247 8709281 Lan12g0883 12 15876981 15881492 PCT
Lan16g0193 16 1516623 1521012 Lan12g0883 12 15876981 15881492 PCT
Lan19g0867 19 16146329 16150307 Lan12g0883 12 15876981 15881492 PCT