Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0881 ATGTATCTGATCAACGGCCAAGGATCCATGTCAAATTCCGGCGGCGATGGCGTCTCCGACCAGTTTCCGGCGGGTCTTCGAGTTCTGGTAGTTGATGATGATCCCACGTGCCTCATGATCCTTGAGAGGATGCTACGTACTTGTCTCTATCAAGTTACCAAATGTAACCGAGCTGAGATTGCACTTATGCTGTTAAGAGAGAATAAGAATGGTTTTGACATTGTTTTAAGCGATGTTCATATGCCGGACATGGATGGATTCAAGCTTTTAGAGCACATTGGTTTGGAGATGGACCTTCCTGTTATTATGATGTCTGCAGATGATAGTAAAAATGTTGTTATGAAAGGTGTAACACATGGTGCTTGTGATTACCTCATTAAACCTGTTCGCATAGATTCTTTGAAGAACATATGGCAGCATGTTGTACGGAAGAAAAAGAACGAGTGGAAAGATACCGAGCAATCGGGTAGCGCTGAAGAAGGAGATAGACAGCTAAGGGCATCTGATGATGCAGATTATTCATCCTCTGCAAATGAAGGCAGACAGAGAAATTCGAAGAAAAGGAGGGATGAGGATGAGGACGCAGACGAGAGAGATGACACATCCGCCCTAAAGAAGCCACGAGTAGTTTGGTCAGTTGAGCTGCATCAACAGTTTGTGGCTGCTGTGGATCAAATAGGAATAGACAAGGCTGTTCCGAAAAAAATTCTGGAATTGATGAACGTTCCCGGGCTCACTAGAGAAAATGTTGCCAGCCATCTCCAGAAATATCGTCTGTATCTTCGAAGGCTAAGTGGAGTTTCTCAGCACCCGAACAACTCTTTCCTCAGCCAACAAGATGCAACTTTTGGGTCAGTATCTTCAATTAACGATCTTCAAACTCTTGCAGCTGCTGGACAGCTTCCTGCACAAAGTTTAGCCACACTTCAAGCAGCAGGACTTGGTAGATCAACTGCAAAAGCGGGCATACCCATGCCTCTTATGGACCAAAGAAACCTTTTCAGCTTTGAGAACCCAAGGTTAAGATTCGGAGAAGGGCAACAACAACATTTGAACAGCAGTAAATCAATAAACTTACTTCATGAAATGTGTACAAACTTGGAGCCAAAGCAGCTTGCCAATTTGCACCAATCTACCCAATCTATTGGCAACTTGAATATACGAGTAAATGCTTCTACTACACAGAGAAACCCCTTATTGATTCACATGACACAATCCCAACCTAAGGGTCAGATGTTAAATGAAAATACTGGTCTTGCTCCCAGACTTTCCTCATCTTTTGGGCAGCCTAATAGAAATGGATTTTTTAATGGTCCTCTTGATAGAAATGGCATTGCTACTAGTAACATAGCATCTGCACAAAACTCTTCGATGTTGAGTTTTCCTAGGAATCAAACCCCTGAAATGTCCATCAGTAGTTTCCCTCTTGGAAGCACTCCAGGCATATCTAGTATCACAACAAAAGGCTCCTTTCAAGAGGAAGTTACTTCGGGAATCAAAGAAGACGGTGGATTTGTTCCAAGTTATGATATTTTTAATGAACTGCACCATCATAAGTCCCGTGACTGGGAAATAACAAGCCCAGGCCTGGCATATGCTGCCTCTCAGCCTGCAAATCCGTTACAAGAATATGGTTGA 1638 0.4316 MYLINGQGSMSNSGGDGVSDQFPAGLRVLVVDDDPTCLMILERMLRTCLYQVTKCNRAEIALMLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIDSLKNIWQHVVRKKKNEWKDTEQSGSAEEGDRQLRASDDADYSSSANEGRQRNSKKRRDEDEDADERDDTSALKKPRVVWSVELHQQFVAAVDQIGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHPNNSFLSQQDATFGSVSSINDLQTLAAAGQLPAQSLATLQAAGLGRSTAKAGIPMPLMDQRNLFSFENPRLRFGEGQQQHLNSSKSINLLHEMCTNLEPKQLANLHQSTQSIGNLNIRVNASTTQRNPLLIHMTQSQPKGQMLNENTGLAPRLSSSFGQPNRNGFFNGPLDRNGIATSNIASAQNSSMLSFPRNQTPEMSISSFPLGSTPGISSITTKGSFQEEVTSGIKEDGGFVPSYDIFNELHHHKSRDWEITSPGLAYAASQPANPLQEYG* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0881 545 MobiDBLite consensus disorder prediction 181 202 - -
Lan12g0881 545 SUPERFAMILY CheY-like 25 149 IPR011006 -
Lan12g0881 545 MobiDBLite consensus disorder prediction 148 169 - -
Lan12g0881 545 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 533 IPR045279 GO:0009736
Lan12g0881 545 SMART REC_2 26 138 IPR001789 GO:0000160
Lan12g0881 545 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Lan12g0881 545 CDD REC_typeB_ARR-like 28 142 - -
Lan12g0881 545 Gene3D - 203 265 - -
Lan12g0881 545 PIRSF RR_ARR_type-B 7 537 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan12g0881 545 Gene3D - 26 162 - -
Lan12g0881 545 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Lan12g0881 545 MobiDBLite consensus disorder prediction 148 202 - -
Lan12g0881 545 Pfam Response regulator receiver domain 28 136 IPR001789 GO:0000160
Lan12g0881 545 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 533 - -
Lan12g0881 545 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160
Lan12g0881 545 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 262 IPR017930 -
Lan12g0881 545 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0881 Lan-Chr12 15868048 15872007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0881 60 536 Response Regulator Gene Family AT3G16857 52.490 4.14e-154 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan12g0881 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0881 - K14491 gmx:100814930 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0881 12 15868048 15872007 Lan12g0881 12 15868048 15872007 ECH
Lan12g0881 12 15868048 15872007 Lan4g0639 4 8724750 8728230 PCT
Lan12g0881 12 15868048 15872007 Lan16g0191 16 1505645 1509624 PCT
Lan12g0881 12 15868048 15872007 Lan19g0869 19 16155703 16159677 PCT
Lan4g0639 4 8724750 8728230 Lan12g0881 12 15868048 15872007 PCT
Lan16g0191 16 1505645 1509624 Lan12g0881 12 15868048 15872007 PCT
Lan19g0869 19 16155703 16159677 Lan12g0881 12 15868048 15872007 PCT