Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0878 ATGGGAAGAAAGGGAGAAGAATCAGATTCCAAGACCCAGTTGGTATTAGAGATTTGCTCCATTTCCACACGTTCTGTTGTTTGTGTTCATAAACATGTTTCAAGCACTGCCAAGGAAACTTTCATTGATTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGTGTGAATACCATTCGCAAGAGATACCATAAACTGGCTTTGCAAGTTCATCCAGATAAGAATAAACACCCCAAGGCTGAAATTGCTTTCAAGCTTGTTTCTGAGGCATATATTTGCCTATCTAATGCTGCAAAGAGAAAAACCTTTGACTTGGAGAGGCATAAGAATTTCTGCATTGAGTGCAAAAGAATCCTTTATACATCCGGCAATTTTGTCGCCCCAGGCAATTCAAGTGGTTCAGGCTTCAAGGTATGGCGTATTATCAGCAGATCAAAATCTTGCAAACTCTGGAGAAATATTAGGGATATGAGAGATAGATTCAGAGAGGAGGCCAAGGTGATAGAGGATTGTTTACATGCAAATTCAATGGTGTCAAGAAAAGAATCTTCACTCTATAATCCACTTGACTATGTACAAAGAAGCAAGTCACTGCATAGATTTGAGAAAGAAACACCTGTTTTCAATCCATCAGATTACTTGCACCAAGAGTACCCTCACCTGAGGAGCCAGATTTACAAGAATTCTGCCACATTTTGGTTCTTAATAGACACAAAGTATGCTGCACAATGA 732 0.3948 MGRKGEESDSKTQLVLEICSISTRSVVCVHKHVSSTAKETFIDWYCILGVEENAGVNTIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYICLSNAAKRKTFDLERHKNFCIECKRILYTSGNFVAPGNSSGSGFKVWRIISRSKSCKLWRNIRDMRDRFREEAKVIEDCLHANSMVSRKESSLYNPLDYVQRSKSLHRFEKETPVFNPSDYLHQEYPHLRSQIYKNSATFWFLIDTKYAAQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0878 243 PANTHER BNAC03G44070D PROTEIN 6 236 - -
Lan12g0878 243 Pfam DnaJ domain 43 104 IPR001623 -
Lan12g0878 243 SUPERFAMILY Chaperone J-domain 32 109 IPR036869 -
Lan12g0878 243 SMART dnaj_3 42 99 IPR001623 -
Lan12g0878 243 ProSiteProfiles dnaJ domain profile. 43 107 IPR001623 -
Lan12g0878 243 CDD DnaJ 43 96 IPR001623 -
Lan12g0878 243 PRINTS DnaJ domain signature 45 63 IPR001623 -
Lan12g0878 243 PRINTS DnaJ domain signature 63 78 IPR001623 -
Lan12g0878 243 PRINTS DnaJ domain signature 79 99 IPR001623 -
Lan12g0878 243 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 236 - -
Lan12g0878 243 Gene3D DnaJ domain 42 165 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0878 Lan-Chr12 15842879 15844200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0878 11 104 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.275 2.03e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0878 - - gmx:100816858 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0878 12 15842879 15844200 Lan19g0875 19 16236812 16238528 PCT
Lan19g0875 19 16236812 16238528 Lan12g0878 12 15842879 15844200 PCT