Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0876 ATGAATTCCAATTACGGCAAATCTAATTCTAATCAATCCAAACCACCTTCTTCTTCTTCTTCTTCTTCCGTTTCCCTCAACAACTTCAATTTCGATTTCGATCTTGGCATCGGATCCAATCCCCCTAAATCCTTAAACGCTCAGAAAAACCCAAATCCACCTTCATATTCCTATTCTACCCCTTCTTCCCATCCCAGACCCACGTGGCAACCCAACAAGCCATCCTGGACCCACCAACCCGCTCCGGTTCAGACCACCCCGACCGGGTTACCGAGTGGACCCACCTCAATAGTCGGTGACATCTTTGGTAAAAGTTGGGGATCCACTCAAACTCGACCTTCTTCCACCTCCACCATTGGGGTCATTAACAAAAACCCCAATCTCTTTGGTGATTTGGTTAGTTCTGCTTTGGGTCAGGCTCCTAATAAAACTTCTTCTACCTCCAATTCCCCTCTCAAAAATGCATTTCCTGCTTCAAACAAACCCTCCTCATTTTCAATGGGGAATGTTGCAGATTCTTTACCTAAAAATGGTAACGCTGCCACTGCTCAAACTAGTTCTAGTTGGGGGTCTTCTGGTAATTTTGGGGGTCTTGGTGGGAATAGTTTCAATGCTAATAGAATTCCCAATCTTGGTGGTACTTCTATGAGTAGTGGAATTGGGATCAAATCTAATAATAATATTGATAATAACAAAGATCCATTTAGTTCTTTGGCTGGTGGTATTGGATCTAAGCCATCTGTTAGTAAACCCCAAAAGATTAATTCTGAGGGTAATGGTTTTGGAGATTTTCAGAATGCTTCCAAACCAACCCCCACTACTTCATTTCCATCAGGTGGTAGTGCAGGAATTGATATCAATTTTAACGGATTCGCGGCTACGAATCCAGCCCCATCAGGTGGTGGGGATCCAATGGACATGTTTTTCTCAGCTTCCACGGCCAACACGGCTGGAGGTGTATCTGGAGGATTCGGAGGGAAGCCTGCCTCGGAAATGGATGATTGGGGTTTGGAATCTGAAGGTTTTGGAGGTCATGATGCAGGTGGCACAACCACTGAGCTTGAAGGGCTTCCGCCACCTCCTGTTGGGATATCAGGTTCGACTGCGAAAGGAAAGGGGATGGACAGTTACAAGCAGGGTCAGTTTGCTGATGCTATTAAGTGGCTTTCGTGGGCTATCGTCCTTTTAGAGAAAGCTGGGGATAGTGCAGCCACTGAGGAGGTTTTGTCATCCAGGGCTTCTTGTTACAAAGAAGTTGGAGAGTATAAGAAGGCAGTTGCTGATTGTACAAAGGTTCTTGAAAATGATGAGACCAACGTATCTGTCCTTGTTCAGCGTGCCCTCTTGTATGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGGACTGTTCTGAAGATTGATCCCAGTAATAGAATTGCTAAAAGTACTGTTCACCGGTTAGCTAAGATGGCTGAATAA 1467 0.4499 MNSNYGKSNSNQSKPPSSSSSSSVSLNNFNFDFDLGIGSNPPKSLNAQKNPNPPSYSYSTPSSHPRPTWQPNKPSWTHQPAPVQTTPTGLPSGPTSIVGDIFGKSWGSTQTRPSSTSTIGVINKNPNLFGDLVSSALGQAPNKTSSTSNSPLKNAFPASNKPSSFSMGNVADSLPKNGNAATAQTSSSWGSSGNFGGLGGNSFNANRIPNLGGTSMSSGIGIKSNNNIDNNKDPFSSLAGGIGSKPSVSKPQKINSEGNGFGDFQNASKPTPTTSFPSGGSAGIDINFNGFAATNPAPSGGGDPMDMFFSASTANTAGGVSGGFGGKPASEMDDWGLESEGFGGHDAGGTTTELEGLPPPPVGISGSTAKGKGMDSYKQGQFADAIKWLSWAIVLLEKAGDSAATEEVLSSRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAKSTVHRLAKMAE* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0876 488 Gene3D Tetratricopeptide repeat domain 366 487 IPR011990 GO:0005515
Lan12g0876 488 ProSiteProfiles TPR repeat profile. 440 473 IPR019734 GO:0005515
Lan12g0876 488 MobiDBLite consensus disorder prediction 41 92 - -
Lan12g0876 488 SUPERFAMILY TPR-like 370 478 IPR011990 GO:0005515
Lan12g0876 488 SMART tpr_5 366 399 IPR019734 GO:0005515
Lan12g0876 488 SMART tpr_5 406 439 IPR019734 GO:0005515
Lan12g0876 488 SMART tpr_5 440 473 IPR019734 GO:0005515
Lan12g0876 488 MobiDBLite consensus disorder prediction 224 281 - -
Lan12g0876 488 Pfam Tetratricopeptide repeat 441 473 IPR019734 GO:0005515
Lan12g0876 488 Pfam Tetratricopeptide repeat 410 438 IPR019734 GO:0005515
Lan12g0876 488 MobiDBLite consensus disorder prediction 1 92 - -
Lan12g0876 488 MobiDBLite consensus disorder prediction 248 281 - -
Lan12g0876 488 MobiDBLite consensus disorder prediction 139 192 - -
Lan12g0876 488 MobiDBLite consensus disorder prediction 1 34 - -
Lan12g0876 488 PANTHER OS03G0340700 PROTEIN 1 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0876 Lan-Chr12 15832346 15835232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0876 381 488 Calmodulin-binding Proteins AT3G25230 33.333 1.02e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0876 - - pvu:PHAVU_003G107800g 540.806