Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0873 ATGGCAGGGAACCAAGAGGGTAAGAAGAAGATGGCCGTTCTCGGCGTGTCTGCGGTGCTTCTCGTGGCGATGGTGGCTTGCGTGGCTGTTGGTTTAAGCCGCGGCGGCGAAGGTGGTGAGGAAGAAACAAAGAGTATAGCAAAAAATCAAAAGAATGTTGAGTTAGTGTGCCAGGCAGCAGAATTCAAAGAAACCTGCCACAAAAGCCTTGCAAAAGTTTCAGAGAATGACACAGACTTGAAGGGGCTTATCATAGCAGCTTTCAATGCAACCGCTATTGAATTGTCTAACCAAATTAGCAATAGCGCCTTGTACGATGAGTTGGCCAAAGATAACATGACTAAACAGGCTGTGGATGTGTGCAAGGAAGTGTTGGGTTATGCTGTTGATGATGTTCACAAAACTATTCACACTTTGGATAAGTTTGATTTGAGCAAGCTCAATGATTATGCCTATGACCTCAAGGTTTGGCTCACAGGTACCCTCAGCCATCAATACACTTGCTTGGATGCCTTTGAGAACACAACCACCAATGCTGGTCAAACCATGACCAAGATGCTCAACTCCTCTTTGGAGCTGAGCAACAATGCCATTGATATAGTGAATGGGTTATCTCATCTATTCCAGGGTCTGAACTTGACCTCATTTACCACAAGTGTCAACAGTAACAGGAGGCTTCTCTCTACACCCACTGTGGATGCTGATGGTTTCCCTTCATGGGTCAGTGAAGGCCAAAGGCGTCTCCTTCAGGCTCATGGACTTGGAAACGTTAAGCCTAATGTAGTTGTGGCTCAAGATGGATCTGGCCAGTTCACAACACTCACTGATGCTATTAAAACTGTTCCAAAAAAGAATAAGACTCCTTATGTGATTTATGTCAAGGCTGGTATCTACAAGGAGTATGTTTCTTTGACCAAGCATCAGACCCATGTCACTATCATCGGAGATGGTCCTACAAAGACCAGGTTCACTGGCAACAAATCTTATAGGGGTGGTCTCCAAACTTATTTCACCTCTACCTTCAGTGTTAATGCCGCCGCCTTCACGGCCAAGGATATTGGGTTCGAGAACACAGCAGGACCTGATGGACATCAAGCAGTGGCACTTCGTGTGACAGCAGATAAGGCAATCTTCCACAATTGTCACATGGATGGTTTCCAAGACACCCTCTATACACAATCACAACGCCAATACTACCGTGACTGCCAAGTAACCGGAACCATCGACTTCATTTTCGGAGATGCTTTTGGTGTGTTCCAAAACTGCAAGCTTATCGTGAGGAAGCCAAATGATAACCAAAATTGCATTATAACAGCCGGAGGTAGAAACAAAGTTGATAGCCTTAGTGCTTTGGTTTTCCAAGGTTGCCAATTCACTGGTGAGCCAACCCTAAAAGCTTTGCCTGAAAAAATATCATTCCTTGGAAGACCATGGAGGAATTTCTCTAAGGTTGTTATCATGGACTCTGATATTGATGATATCTTCAACCCTGAAGGTTACATGCCATGGGCAGGGAGTGCATTTGAGAGCACATGTACCTATTATGAGTACAATAACAAGGGTCTTGGTGCTGATACAAGTAAGAGGGTTAAATGGCCTGGTGTTAAGGTTATTACACCCGTTGAAGCTGCTAATTTCTATCCAGGAAAGTTCTTTGAAATCGCTAATGTAACTCAACGTGATAGCTGGATCGTAACTTCAGGGGTTCCTTATGCATTTGGCCCTTACAAAATGGTGCCGCTCCCAAATCTTCCCATCAAACAGTTTAATTAA 1773 0.4439 MAGNQEGKKKMAVLGVSAVLLVAMVACVAVGLSRGGEGGEEETKSIAKNQKNVELVCQAAEFKETCHKSLAKVSENDTDLKGLIIAAFNATAIELSNQISNSALYDELAKDNMTKQAVDVCKEVLGYAVDDVHKTIHTLDKFDLSKLNDYAYDLKVWLTGTLSHQYTCLDAFENTTTNAGQTMTKMLNSSLELSNNAIDIVNGLSHLFQGLNLTSFTTSVNSNRRLLSTPTVDADGFPSWVSEGQRRLLQAHGLGNVKPNVVVAQDGSGQFTTLTDAIKTVPKKNKTPYVIYVKAGIYKEYVSLTKHQTHVTIIGDGPTKTRFTGNKSYRGGLQTYFTSTFSVNAAAFTAKDIGFENTAGPDGHQAVALRVTADKAIFHNCHMDGFQDTLYTQSQRQYYRDCQVTGTIDFIFGDAFGVFQNCKLIVRKPNDNQNCIITAGGRNKVDSLSALVFQGCQFTGEPTLKALPEKISFLGRPWRNFSKVVIMDSDIDDIFNPEGYMPWAGSAFESTCTYYEYNNKGLGADTSKRVKWPGVKVITPVEAANFYPGKFFEIANVTQRDSWIVTSGVPYAFGPYKMVPLPNLPIKQFN* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0873 590 CDD PMEI-like_3 55 205 - -
Lan12g0873 590 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 204 IPR006501 GO:0004857
Lan12g0873 590 PANTHER PECTINESTERASE 5 578 - -
Lan12g0873 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 204 IPR035513 -
Lan12g0873 590 PANTHER PECTINESTERASE 5 578 - -
Lan12g0873 590 Pfam Pectinesterase 260 552 IPR000070 GO:0030599|GO:0042545
Lan12g0873 590 Gene3D - 257 576 IPR012334 -
Lan12g0873 590 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Lan12g0873 590 SMART PMEI_2 48 200 IPR006501 GO:0004857
Lan12g0873 590 Pfam Plant invertase/pectin methylesterase inhibitor 53 200 IPR006501 GO:0004857
Lan12g0873 590 SUPERFAMILY Pectin lyase-like 258 571 IPR011050 -
Lan12g0873 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 205 IPR035513 -
Lan12g0873 590 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0873 Lan-Chr12 15806746 15809452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0873 8 571 Carbohydrate Esterase AT5G49180 44.580 7.49e-174 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0873 K01051 - gmx:100820068 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0873 12 15806746 15809452 Lan12g0873 12 15806746 15809452 ECH
Lan12g0873 12 15806746 15809452 Lan19g0618 19 11588187 11591296 PCT
Lan19g0618 19 11588187 11591296 Lan12g0873 12 15806746 15809452 PCT