Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0872 ATGGAAAACGATGATTCCAACGACAACGGGAATGAAGCTGAATATGCTTTCAATGGAAAAATGTTGCTAATTTGTAGTGTCATTCTCTTCATCGCCGTCATCATAATGCTCTCCGTCCACGCCTATTTCCGGTTATACTTTCTACCTGCTCGTCATCGTCAACTTCTCCGTCGCATCCGCAGCCGCAGTCGTCGCAACCGTCGCTCTCTCCCATTCTTCTACATTGACCCCACACTGACGGCGGTCTCACGCGGCCTCAAAGCCTCTGTGATCACATCGCTCCCAGTCTTCACATTCTCCAAAAACAATGATCCAATTGAATGCGCGGTTTGTTTATCAGAATTCGAAGACGGTGAAACGGGCCGGGTTTTGCCGAAATGTAAACACAGTTTTCATACTGAGTGTATTGATATGTGGTTCGTGTCACACTCTACATGTCCACTTTGTAGAGTCCACGTGGAGGATTCATCAGATGGAGAAACTCGAGCTGAAGTGGTTGTCACTCTTTGTGAATCGGAAACGGGTTCGAGCTCTGAAGAAGTGAACCAGACTCATGTGCTGGTTCGTTCTTCATCGTTAGAGCCGGTTTGTGACTCGGCGACGACGTCGTTTCGATCGACTTTGAGTCGGAAGTTGTCATTTAAGAGAAATTTTAGCAAGGAGTGTAAAGAGCCGTCAGATGTAGAGCAAGGAGGAGAGGAGACTCAGTAG 711 0.474 MENDDSNDNGNEAEYAFNGKMLLICSVILFIAVIIMLSVHAYFRLYFLPARHRQLLRRIRSRSRRNRRSLPFFYIDPTLTAVSRGLKASVITSLPVFTFSKNNDPIECAVCLSEFEDGETGRVLPKCKHSFHTECIDMWFVSHSTCPLCRVHVEDSSDGETRAEVVVTLCESETGSSSEEVNQTHVLVRSSSLEPVCDSATTSFRSTLSRKLSFKRNFSKECKEPSDVEQGGEETQ* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0872 236 CDD RING-H2_EL5_like 107 150 - -
Lan12g0872 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 156 IPR013083 -
Lan12g0872 236 PANTHER RING-H2 FINGER PROTEIN ATL64 10 196 - -
Lan12g0872 236 Pfam Ring finger domain 107 150 IPR001841 -
Lan12g0872 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 196 - -
Lan12g0872 236 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lan12g0872 236 SUPERFAMILY RING/U-box 102 155 - -
Lan12g0872 236 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0872 Lan-Chr12 15792815 15793797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0872 4 236 Rapid Response to Elicitors AT3G16720 40.541 1.92e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0872 - - gmx:100800859 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0872 12 15792815 15793797 Lan16g1126 16 18334676 18351157 PCT
Lan12g0872 12 15792815 15793797 Lan19g0590 19 11094415 11094972 PCT
Lan16g1126 16 18334676 18351157 Lan12g0872 12 15792815 15793797 PCT
Lan19g0590 19 11094415 11094972 Lan12g0872 12 15792815 15793797 PCT