Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0869 ATGGGTAATTGCAACGCATGCGTTAGAGGAGGCGCTGACGTGGCAGTCGCCGTAGAAGAAAACCAGTCACACTCTAACCGCGGCACCACCACCAAGAAGAAGAAAAACAAACCCAACCTCTTCTCAGAGGACCCAAAAAACTCACCGTCTCCGATCCGGGTCCTTAAAGACTTGATCCCATTATCTCACTTAACCCGAATCAGTGACAAATATGTATTGGGTCGTGAACTGGGTCGTGGCGAGTTCGGCATAACATATCTCTGCACCGACCGAGAAACCAAACAACAACTAGCGTGTAAATCAATCTCAAAACGGAAGCTTCGAACCGCAATAGATATCGAAGATGTTCGGCGTGAGGTGGCGATTATGTCAACGCTTCCAGAACATCCTAACTTGGTGAAGCTGAAAGCGACTTATGAGGATGAAGAAAACGTTCACCTTGTTATGGAGTTGTGTGAGGGTGGTGAATTATTTGATCGGATTGTGGCACGTGGACACTATAGTGAGCGTGCGGCGGCGAACGTGGCTAGAACTATTGCTGAGGTTGTTAGAATGTGTCATTCTAATGGGGTTATGCATAGAGACCTTAAGCCTGAGAATTTTCTATTTGCTAATAAGAAAGAGAATTCTGTTCTTAAAGCTATTGATTTTGGACTCTCTGTGTTCTTTAAGCCTGGGGAGAGATTTGCGGAGATTGTGGGGAGTCCTTATTACATGGCACCTGAAGTTTTGAAGAGGAATTATGGGCCAGAGGTTGATATATGGAGTGCTGGGGTGATTCTTTATATCTTGCTATGTGGGGTTCCTCCATTTTGGGCAGAGAGTGAACAAGGGGTTGCTTTAGCGATTTTGAGGGGTGTGATTGACTTCAAGAGGGAACCATGGCCTCAGATATCGGAAAGTGCTAAGAGCCTTGTGCGCCAGATGTTGGAACCTGATCCTAAGAAGCGCTTGACGGCTCAGCAAGTGCTAGAACATTCCTGGCTACAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCTATGATGAATAGATTCAAAAAGAGAGCTCTCCGGGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAAGGTTACATATGAGGAGCTGAAGGCTGGGTTGCGGAAAGTTGGTTCACAACTGGCTGAGCCAGAGATGAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTGGCCGTGACGATTCACTTGCAAAGAATGGAAAATGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGATAAAGATGGGAGTGGATATATTGAGTTAGGCGAGCTAAACGAAGCACTAGCCGACGAGTCAGGACAAACCGAAGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGCCGCATCAGTTATGATGAGTTTGTAGCGATGATGAAGACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGTTTGAGCATAAATTTGATGAAAGACGGCTCACTTCAGCTTCATGATGAGATGAGTGGTGAAGCTATAGTTGTTTGA 1662 0.444 MGNCNACVRGGADVAVAVEENQSHSNRGTTTKKKKNKPNLFSEDPKNSPSPIRVLKDLIPLSHLTRISDKYVLGRELGRGEFGITYLCTDRETKQQLACKSISKRKLRTAIDIEDVRREVAIMSTLPEHPNLVKLKATYEDEENVHLVMELCEGGELFDRIVARGHYSERAAANVARTIAEVVRMCHSNGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFAEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAESEQGVALAILRGVIDFKREPWPQISESAKSLVRQMLEPDPKKRLTAQQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSMMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGKVTYEELKAGLRKVGSQLAEPEMKMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHFHKAFKFFDKDGSGYIELGELNEALADESGQTEADVLNDIMREVDTDKDGRISYDEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDEMSGEAIVV* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0869 553 SMART efh_1 412 440 IPR002048 GO:0005509
Lan12g0869 553 SMART efh_1 484 512 IPR002048 GO:0005509
Lan12g0869 553 SMART efh_1 376 404 IPR002048 GO:0005509
Lan12g0869 553 SMART efh_1 448 476 IPR002048 GO:0005509
Lan12g0869 553 SUPERFAMILY EF-hand 357 536 IPR011992 -
Lan12g0869 553 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Lan12g0869 553 Gene3D Phosphorylase Kinase; domain 1 72 156 - -
Lan12g0869 553 CDD STKc_CAMK 70 328 - -
Lan12g0869 553 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Lan12g0869 553 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Lan12g0869 553 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Lan12g0869 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lan12g0869 553 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lan12g0869 553 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Lan12g0869 553 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Lan12g0869 553 SUPERFAMILY Protein kinase-like (PK-like) 47 357 IPR011009 -
Lan12g0869 553 PANTHER BNAA09G44420D PROTEIN 18 529 - -
Lan12g0869 553 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Lan12g0869 553 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0869 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 529 - -
Lan12g0869 553 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0869 553 Gene3D - 338 513 - -
Lan12g0869 553 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Lan12g0869 553 MobiDBLite consensus disorder prediction 19 48 - -
Lan12g0869 553 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0869 553 CDD EFh 448 510 IPR002048 GO:0005509
Lan12g0869 553 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Lan12g0869 553 Pfam EF-hand domain pair 377 436 IPR002048 GO:0005509
Lan12g0869 553 Pfam EF-hand domain pair 447 510 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0869 Lan-Chr12 15778626 15783115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0869 1 553 EF-hand Containing Proteins AT1G18890 80.108 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan12g0869 Pkinase 6.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0869 K13412 - gmx:100809838 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0869 12 15778626 15783115 Lan1g1996 1 35152369 35156338 LSH