Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0868 ATGGGGAACAAAAAGCGAAACTCTCATGCTCCGCGTTCCAAACATTCTCCGGCGGCTTCTCCGGTGACGCAATCTGCCATCGGCGGAGCCGCCGGTGTTCCCGAATTCGATTCTTTCATGGTGGTTTCTGATCTCATCATACATAACCCTAGCACTAAGATCGAATTGTCCCCTAACACTGATGGTTCAATTTACAACTCAATCAAGCTTGAATGTGACAAAGCCCTAAAGGCTTTTCGTCGCGGTAACCACAACAGAGCGCTTAAGATGATGAAGGATTTGTGTTCCAAACATGAGGGTTCCGCTTATGCTGGGTTCACTCAGCGAGTTCAGGGCTTTGTGTTGTACAAGGTGTCCTCGATTATGAACGACCCGGCTGTGAAGCAGCGGCATTTGAGGAATGCTGTTGATTCGGCAAGGAGAGCCACTGAGCTATCGCCGAAGTCAATTGAGTTTTCGATGTTTTATGGTAATTTGTTATTGGAGGCTGCGACTGAGGCAAAAGATTATGAGGAGGTTGTGCAGGAGTGTGAGAGGGCACTCGCGGTTGAGAACCCTAACGATCCTGTGAAGGAGAGTTTGCAGGATGAGAGCGAGCATAAATCGTCGACTATGGAGTCACGGATAGCATATGTGCAAAATGAGTTGAGGCAGCTGATTCAGAAGTCGAATATAGCATCACTATCGACTTGGATGAAGACTTTGGGTAATGGTGAGGAGAGGTTTCGGTTGATTCCATTAAGGAGGCCCGTGGAGGATCCAATGGAGATGAGGTTGGTTCAGAATAGAAGGCCAAATGAGATTAAGAAGGTGTCCAAGACACCAGAAGAAAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCGAGGCTGTTGCAGCAGAAGTCAGAGTCGCCTCAATCTCCTAATGAAGCAGATAGGGAGGAGAGGTCATTGGACTCCTCATCAGGATCTGGTCATAGAATCGGTGATAGGCGTAAGTATGGGAATGCGAGAAAGAACGGATCTACTGATGAAAGTAGGAATTGGGTGCACTCATATTGGAATTCAGCGAGTATGGAAATGAAGAAGGAGTTGCTTAGGATTAGAGTGAGTGATCTCAAGTCGCATTTTGGGTCTTCAAAGGATACCTTGCCAAGAGATGTTTTATCAGAAGCTTTGTCCTATGCCGAGTCCAGTAAAACATGGAAATTCTGGCTTTGCTCTGAGTGTGATGAGAAATTTTCTAACCCGGAATCTCACAGGCAGCATGTTATGAAGGAACACATGCGGAATCTCTTTCCAAAGATGCAGAGTCTTTTGCCCCAAAATGTTGACAATGAATGGATTGAGATGATTCTAAACTGCTCTTGGAAGCCTCTGGATGTCTCAGCTGCAATTAGAATGCTTGTCAATAAATCAAAATTCAATGTCTCTCCATTCACCGAGGATTCATACTTCGGGCCTCATACCCAGAAATACCCTCATGCTCAGAACTATAATGACTGTTTTAAAGATGCAAGTGATTCTTTCCATGAGAAGGGAAGCTTGGGGTATAGTCTTCACAATGGTACAACAAAAGGCAGTGACAACTGTAAAATTGCAGGAAGTGATATTACAGAAGGTGTTGAAGATCAAGGATCTAAAGCCTACCCTTTTGCAGATAGTTGGCCAGTATCTGATGACTCTGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGATGCTTATCAGGCACAAATTTCTTGCTTCTAGTCATCTTAACAAGGTCATACAATTTACTATGGGTGAGATACAGGGTCTTGCTGCGGGTTCTCTACTTTTAAACCGCGGTGTTGATCAAACACCAATGTGCATATGCTTTCTGGGAGTTTCACAGCTCAAGAAAATTCTCCAATTTCTGCAGGAACTTTCTCATGCTTGTGGGTTGGGTAGATATCCTGACAAAAGTACTGATCCCATGAATGATTCACACGATATCAATGAAGTTCCTGAGATCAAAGAGAAAATTGTTCTCAGTGGAGATTCGTCATGTCTCCTTCTGGATGAGTGTTTACTGCCAACACAAGTCACTTCTGGTACAACTCAGGGGTCTGTCTTGGATGATGTGACTGCCCCAGGTTCTCCTGATGGTATTTCACACAATAACGATGCTTTATTATCCTGGATATTTTCAAGTTCACCTATTGGAGATCAATTAACATCATGGATGCGGACAAAAGAAGATAAAAAGAATCAGGGAAAAGAAATTGTTGAGTTTCTCGAGAAGGAGTTTTTACAGCTACAAGGCCTATGTGAGAAGAAGTTTGAGCGTATAAGTTATGAGGAAGCACTTCAGACAGTAGAGGATCTTTGTCTTGAAGAAGGTAAAAAGAGGGAACATGGTGGTGAATTTGTACAGCGAAGCTATGAGTCTGTTTTAAGAAAGCGAAGAGAAGAGCTCACTGAGAGTGAAAATGATGTGACATATGTAAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTCTGCAAGAAGCTGAAGCTGTGAATGTTAACCAATTTGGCTGTGGGGAAACTTATGCGGGTGTGAATTCTCAATTATGTGACTTGGAATCTGGTGAAAATGGATGGAGAATGAAGGACTACTTGCATCAAATGGATGGTTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCAGTTATCTATTGAGCTTAGTAAACTTGATGCACGAATCATAAAAAATGTTACAGACATGCAGCAAATGGAACTAAAGCTTGGGCCTGTTTATGCCTATGATTATCGAGCAATATTATTGCCTCTGATGAAGTCATACCTGAGGGCGGTTTTGGAAGATTTGGCTGAGAAAGATGCAACGGAGAAGTCTGATGCTGCACGAGAAGCATTTTTGGCAGAACTTGCTCTTGATTCCGAGAAGGGTGTTAAAGGGGGAAGTGAGAACACAAGACATATGGAGAAGACTAAAGATAATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGGTTCAAAGGCTACAAGTGCTCATGGTCAGCTCTTGCTTAGAGATACAATTCCCGATTCCAATCCAGTTGCACCTAACAGTTACTTTCAAGATATTGTTGTTACCATGAATGGTGATGCCATGGAACATCAGGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGAAAAAACTTGAAGAAACATTGGAATTTCAGCGAAGGATAGAAAATGAAGTCAAACAGAAGCACCTCGCTGAGCAACAAAAGAAATCATCTGGCACCTATTTAAAGGAAGTGGTGGACAAACTTCAGGATGTCCAGTTGGAGGCAGTTGCTCATGGTCCAGATGTGCAGGAACATTTTAGACCACATACACGGGAGCAGTTGGTAAAGGAGAATGGGTTCCCAATCAATCTGGATATTATGCTTATCACCCCAGAAAATGGTTCTTTGGAGCCAGCTAAATCTTCAACTGATTCAACTGCCCAAAAGATTGGTTATTTGCATCAGTCAAAGGTTAAACAAGATCTGTCTAATGGAGTTATTTCAGAGAATGGTCTTCAGTTGTCTGATAGGCGTCAAGGCAAAAGGCATAAACGACATAAGAATTCTGCCAGAATTGTTGATGAAAAGTTTGAACCAGTTGCGTCGGAAAGGGAGAATACCGAGAATACTCACACCGATTATCATTTAAGAGAGCAAGTTAAATCTCATAACAATCAAGATGCTAACAATGTGTGGGAAAACAATGGATCCATGGCGTTGAAAGAGTTGAAAATGAAAGATGAGGAGGAAAGATTCCAAGCTGATCTTAAGAGAGCTGTACGCCAAAGTTTGGACACATATCAAGCACATGGCAAAGTGCCTCCAGTTTCTGGTTTAAGATTGTTGGAGAGAGCTTCCTCACAAGTAGATAGTTCTGGTTTTGTACTAGAGGAAGCCCCAACCGAGGATGTGAATGGAGCTACTTTGCTTGGTACTGGTCTGAAGAATGAAGCGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATATAAGACGCTTTCGGGAGGAGTTTCTTGGCATATCAAGATCAGAGCACGATCATGTGGGTAACCCCTGTGTTGTCTGTGCATTGTATGAAATTTTTTCCGCACTGAACCTTGCATCAAAAGATCCAAGGAGAGAAGCTGTTGCACCTACTTCCCTACGAGTGGCTCTAAGCAACTTATATCCAGATAGTAACTTCTTCCAAGAGCTTCAGATGAATGATGCTTCTGAGATACTGGCAGTGGTATTTGACTGCCTTCATCGATCTTTTACTCGTAGTTCAAGTGTTTCTGATGCAGAATCGGTGGAAAGCAACTGCTTGGGATCTTGGGATTGTGCATACAGTAATTGCATTGCACATTCTCTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTACAATTGTGGTCTTGAGTCCAGACATTTGAAGTATACTTCTTTCTTTCACAATATAAATGCGAATGCCATCCGGACAATGAAGGATATGTGTACTGAAACTAAAAGCTCTTTTGATGAGCTTTTGAATCTTGTGGAGATGAACCATCAGTTAGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAGCTCAATTACATCCATCACTTTCTTTCAACTGCACCCCACGTTTTTATGACAGTTCTAGGTTGGCAAAATACTTGTGAGAGTGTTGATGATATAAAAGCTACACTGGCAGCCTTGAACACCAAGATAGATATCAGTGTCCTTTATCGTGGTTTAGATCCTAAAAGCACCCACAGCTTGGTTTCAGTGGTTTGCTACTATGGTCAACATTATCATTGTTTTGCTTATAGTCATGACCATCGACAATGGATAATGTATGATGACAAGACTGTCAAGGTAATTGGTGGATGGGCAGATGTTCTTACAATGTGTGAAAGAGGGCATCTGCAACCTCAGGTTCTTTTTTATGAAGCTGGAAACTAG 4968 0.4195 MGNKKRNSHAPRSKHSPAASPVTQSAIGGAAGVPEFDSFMVVSDLIIHNPSTKIELSPNTDGSIYNSIKLECDKALKAFRRGNHNRALKMMKDLCSKHEGSAYAGFTQRVQGFVLYKVSSIMNDPAVKQRHLRNAVDSARRATELSPKSIEFSMFYGNLLLEAATEAKDYEEVVQECERALAVENPNDPVKESLQDESEHKSSTMESRIAYVQNELRQLIQKSNIASLSTWMKTLGNGEERFRLIPLRRPVEDPMEMRLVQNRRPNEIKKVSKTPEERRKEIEVRVAAARLLQQKSESPQSPNEADREERSLDSSSGSGHRIGDRRKYGNARKNGSTDESRNWVHSYWNSASMEMKKELLRIRVSDLKSHFGSSKDTLPRDVLSEALSYAESSKTWKFWLCSECDEKFSNPESHRQHVMKEHMRNLFPKMQSLLPQNVDNEWIEMILNCSWKPLDVSAAIRMLVNKSKFNVSPFTEDSYFGPHTQKYPHAQNYNDCFKDASDSFHEKGSLGYSLHNGTTKGSDNCKIAGSDITEGVEDQGSKAYPFADSWPVSDDSERAKLLEKIHAVFEMLIRHKFLASSHLNKVIQFTMGEIQGLAAGSLLLNRGVDQTPMCICFLGVSQLKKILQFLQELSHACGLGRYPDKSTDPMNDSHDINEVPEIKEKIVLSGDSSCLLLDECLLPTQVTSGTTQGSVLDDVTAPGSPDGISHNNDALLSWIFSSSPIGDQLTSWMRTKEDKKNQGKEIVEFLEKEFLQLQGLCEKKFERISYEEALQTVEDLCLEEGKKREHGGEFVQRSYESVLRKRREELTESENDVTYVSNRFELDAISNVLQEAEAVNVNQFGCGETYAGVNSQLCDLESGENGWRMKDYLHQMDGCIEIAIQKLKEQLSIELSKLDARIIKNVTDMQQMELKLGPVYAYDYRAILLPLMKSYLRAVLEDLAEKDATEKSDAAREAFLAELALDSEKGVKGGSENTRHMEKTKDNKKKNKDHRKTRGSKATSAHGQLLLRDTIPDSNPVAPNSYFQDIVVTMNGDAMEHQEEEFRRKIELEEEKKLEETLEFQRRIENEVKQKHLAEQQKKSSGTYLKEVVDKLQDVQLEAVAHGPDVQEHFRPHTREQLVKENGFPINLDIMLITPENGSLEPAKSSTDSTAQKIGYLHQSKVKQDLSNGVISENGLQLSDRRQGKRHKRHKNSARIVDEKFEPVASERENTENTHTDYHLREQVKSHNNQDANNVWENNGSMALKELKMKDEEERFQADLKRAVRQSLDTYQAHGKVPPVSGLRLLERASSQVDSSGFVLEEAPTEDVNGATLLGTGLKNEAGEYNCFLNVIIQSLWHIRRFREEFLGISRSEHDHVGNPCVVCALYEIFSALNLASKDPRREAVAPTSLRVALSNLYPDSNFFQELQMNDASEILAVVFDCLHRSFTRSSSVSDAESVESNCLGSWDCAYSNCIAHSLFGMNIFEQMNCYNCGLESRHLKYTSFFHNINANAIRTMKDMCTETKSSFDELLNLVEMNHQLACDLEVGGCGKLNYIHHFLSTAPHVFMTVLGWQNTCESVDDIKATLAALNTKIDISVLYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHRQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFYEAGN* 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0868 1655 MobiDBLite consensus disorder prediction 291 340 - -
Lan12g0868 1655 MobiDBLite consensus disorder prediction 301 334 - -
Lan12g0868 1655 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1655 - -
Lan12g0868 1655 Coils Coil 733 753 - -
Lan12g0868 1655 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1655 - -
Lan12g0868 1655 SUPERFAMILY Cysteine proteinases 1320 1652 IPR038765 -
Lan12g0868 1655 Pfam Protein of unknown function (DUF627) 74 185 IPR006866 -
Lan12g0868 1655 ProSitePatterns Zinc finger C2H2 type domain signature. 401 422 IPR013087 -
Lan12g0868 1655 MobiDBLite consensus disorder prediction 1 24 - -
Lan12g0868 1655 CDD Peptidase_C19 1412 1652 - -
Lan12g0868 1655 Pfam Ubiquitin carboxyl-terminal hydrolase 1320 1651 IPR001394 GO:0004843|GO:0016579
Lan12g0868 1655 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1320 1654 IPR028889 -
Lan12g0868 1655 MobiDBLite consensus disorder prediction 970 1020 - -
Lan12g0868 1655 Gene3D Cysteine proteinases 1307 1653 - -
Lan12g0868 1655 Coils Coil 160 180 - -
Lan12g0868 1655 MobiDBLite consensus disorder prediction 972 988 - -
Lan12g0868 1655 Pfam Protein of unknown function (DUF629) 344 881 IPR006865 -
Lan12g0868 1655 Gene3D Tetratricopeptide repeat domain 66 207 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0868 Lan-Chr12 15755107 15765418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0868 68 1652 C2H2 Transcription Factor Family AT3G47890 55.202 0.0 1667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0868 - - adu:107493676 2336.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0868 12 15755107 15765418 Lan1g1383 1 23556378 23565831 LSH
Lan12g0868 12 15755107 15765418 Lan1g1995 1 35124561 35134285 LSH