Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0866 ATGGACGGTGGCGATAATTCACAGTCCGATAAGGAGGAGGAGAATGATGATGTGGACTTGCCGGAGATTCTCTCGCGAGTTCGACTCGTCGATGCTCCTATACTCTTGTTTGTTTGTTTTCATAAAGCTTTGCGTTCTGAACTACGCTTGCTTCGTCGCATAGCCAAAACGGCGTCGTTGGAGGATGAACATCAACGAAGGCGAGAAACGATCGTTAAGCTTCGAAGTAGGTTCCAGTTTCTTAAACTAGCTCAAAAGTATCATTGCGCTGCGGAAGATGAGGTTATCTTCCTTGCACTAGATATACATGTGAAAAATGTGGCATGTACATATTCCCTTGAACATAGCAGCACCGAGGAACTCTTTGATTCTATCTTTCACTTCTTGGATGAGCTCATGGGACCTAGTCAGAATTTTTCAAAGTTGTTCCAAGAACTTTTGTACAGTATTGGCATCTTGCAAACCTCCATTAACCAAAATATGCTGAAAGAAGAAAAGCAGGTTTTTCCTCTGTTGATGCAGAAATTATCTACTAAAGAACAGGCTTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTTCTAGAGGAACTTTTGCCATGGATGGTTTCCTTCCTTTCTGCAGACAAAAAAACAGAAGTCACTCAGTGTTTAAATGAACTTGCACCAATGGAGAAAGCACTGCAAGAGGTTTTGGTTTCTTGGGTTGGAAGCAACAACCATACTTTCGGTGAGGCCTATTTTGAAATTGAAGAAGTTCAATGTGCTGATGGTTCCCTACATATAGAAAGACCACTTAGGTTGAGTTCTTGCAATAAGAATTCGATAGAAGCTTCCAGTTGGATGAAAATGAATGGCCTAGAAATAGAAGATGGGGTCAACCAGGTTAATGTTCTTCAACTTTGGCATGAGGCCATCAAGAAAGATTTGAAAGAAATTTTGAAGGAACTTCATCTAATAAGAAACTCTAGCTGTTTTCAGAATTTAGACGCAATAGTTATCCAAATAAATTTCTTTGCAGATGTCCTCTTCTTTTACAGCAATGCTCAGAAGACATTTTTTCATCCTTTACTGAATAAACCTGCTTATGACTGGTTGCCCAAGTCTAGCGAACAGTTTCTTTGTGAAAGTCACATTGAAGATTTACAGCAGTTGTTGTGTAACTTGGAAAGTGGAATGCCTTTGTGCAACATTGTGGAGGAGCTTTGCAGAAAACTCGAATCATTTATATCCGGAGTTAAAAAACAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGTCATTAAAAAGAACTGCAGAAATGGAATACAAGAGAGACTTTTGAGCTTGAGCCTGCAAATGATGCCACTTGGGTTACTTAGATGTGTTATAAATTGGTTTTCAGCTCACTTGTCTGAAAAGGAATCCATGTCCATTCTGTATTACATAAAGAAAGGAAACCATTTTGTCTGTGAAGCTTTTTCATCACTGTTACATGAATGGTTCTGCATTGGTTATACAGGTAAAACCTCCATTGAGAAATTCCGACAAGACTTGCAGCATATGTTCAAAAGTAGATGGTCTTTCTTGCCTGAGAAAATTAAGGAATGGTCTGAATTTTCTTTATTAAATTCTGACCAACAGCCTAATAAATTCTCTGGCAAGAATTGTTTGTCCTATTCCTCATCTTCTGGGTCCAACAACTCATACAAGTATGAGACACCGTACTCCATTGGAATTAATCTGCATATATTTTTCCCTGCCACAGTTGGGAAGTTACACCAGAGTTCTAGATTCCATGCAGCAAATAGTTCTTCCATTTCCTTTCTTGGTGATCCAAAACCAATTGACTTAATATTTTTCTTTCACAAGGCTATCAGGAAAGACTTGGATTACCTTGTTCTTGGCTCAGCTCAGTTAGAACAAAATGCCAAGTTGCTTATGGATTTCCGCAAAAGATTCCATCTCATATGTTTTCTTCACCAAATCCATACTGATGCAGAGGATGAGGTGGTTTTCCCAGCCTTGGAGGCAGGGGGTAATCTCAAAAACATTAGCCATGCTTACACTTTTGATCACAAACTTGATGATCAGCACTTCAATAAAGTATCCCGGGTCCTTGATAAGATGTCTGAATTACATCTTTCAGTTTCTACCATTGATTCAAATGTAAGGGAGAATATAATGCTAAGGCATCATCATTTATGCAGGAAGCTTCAACAAATGTGCAAGTCAATGCATAAGTTACTTTCTGACCATCTGGACCGTGAGGAAATAGAAATTTGGCCCATGATTAGGGAATTATTCTCGATTCAGGAGCAAGAGAAGATTATAGGATGCATGCTTGGAAGAATAAAAGCAGAAATATTACAAGATATGATACCCTGGCTAATGGCATCTTTAACACCGGAAGAACAGCATGTTGCAATGTTCTTATGGTCCATGGCTACTAAAAACACAAGTTTTGATGAATGGTTAGGTGAATGGTGGGACGGGTACATTATAGCTAAGGCAACAGAAGGATCAAATGACACCCCTCTACCAACCATTGACCCACTGGAGGTGATATCCAAATATTTGTCTGAAGAAGTTCTGAATGAAATACAAGAAGAATCCTCTCCCAACAAAAGCATAAATTTGTTTCAGAAGGATCATACTGGTGATAATGTTGACCCGTATAACTACAATATTGATGGCAAAGTTAAGGTTCACAATGCAGAACAAAATAATAATGAATGTTCAAAATTTACAAACCAATTCCATGATAGCAAAAAACATGCTCGCAGTAGAGTAACAGATATCACAAATTTGGTCAATAATGGCCAATCTTTTCAATTGATTGACAAGTCTGAGCATTATGATCGACTACTTAAACTGAGTCAAGATGATTTGGAGATGGCAGTAAGAAGGGTCTCTCGTGACTCTGGCTTAGATCCTCAGAAGAAGTCATACATAATACAGAACCTGCTAATGAGCCGTTGGATTATTAGTCAGCAGATATCTTCTACAGAAGTCAATATGAATAGCGATGGACAGGAATTTCCTGGGAAGCATCCATCTTATAGGGACCCTCTCAAACTAATCTATGGTTGCAAACACTACAAGAGGAACTGTAAGCTTTTTGCTCCATGCTGCAACCAACTTCATACCTGCATACATTGCCATAACGAGGTATCAGAACCAGATCATTCAATTGACAGGAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGGTGATCCAACCAATTAGTGCCACATGCTCAACCATTTCATGCGGTAACTTATCCATGGCAAAATATTACTGCGCGATCTGCAAATTATTTGAAGATGAAAGGGAAATTTACCATTGTCCTTATTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTTGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGGTACATACATGCAGAGAGAAACACTTAGATGGTAATTGTCCAATTTGCCATGAATACATCTTCACATCCTGTTCTCCTGTGAAAGCCCTCTCATGTGGACATGTCATGCACTCAACATGTTTTCAGGAATATACATGCTTTAACTATACCTGTCCAATATGTAGCAAATCGCTTGGCGACATGCAGGTATATTTTAACATGTTAGATGCATTATTGGCTGAAGAGGAAGTTCCTGAAGAACTTTTGGGTCGAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCAGCCCCCTTCCACTGGCTTTACCACAAATGTCCTTATTGTGGTTCCTACAACACCAGAGTTCTATGA 3792 0.389 MDGGDNSQSDKEEENDDVDLPEILSRVRLVDAPILLFVCFHKALRSELRLLRRIAKTASLEDEHQRRRETIVKLRSRFQFLKLAQKYHCAAEDEVIFLALDIHVKNVACTYSLEHSSTEELFDSIFHFLDELMGPSQNFSKLFQELLYSIGILQTSINQNMLKEEKQVFPLLMQKLSTKEQASLVWQFICSVPIMFLEELLPWMVSFLSADKKTEVTQCLNELAPMEKALQEVLVSWVGSNNHTFGEAYFEIEEVQCADGSLHIERPLRLSSCNKNSIEASSWMKMNGLEIEDGVNQVNVLQLWHEAIKKDLKEILKELHLIRNSSCFQNLDAIVIQINFFADVLFFYSNAQKTFFHPLLNKPAYDWLPKSSEQFLCESHIEDLQQLLCNLESGMPLCNIVEELCRKLESFISGVKKQFAFQETEVFPVIKKNCRNGIQERLLSLSLQMMPLGLLRCVINWFSAHLSEKESMSILYYIKKGNHFVCEAFSSLLHEWFCIGYTGKTSIEKFRQDLQHMFKSRWSFLPEKIKEWSEFSLLNSDQQPNKFSGKNCLSYSSSSGSNNSYKYETPYSIGINLHIFFPATVGKLHQSSRFHAANSSSISFLGDPKPIDLIFFFHKAIRKDLDYLVLGSAQLEQNAKLLMDFRKRFHLICFLHQIHTDAEDEVVFPALEAGGNLKNISHAYTFDHKLDDQHFNKVSRVLDKMSELHLSVSTIDSNVRENIMLRHHHLCRKLQQMCKSMHKLLSDHLDREEIEIWPMIRELFSIQEQEKIIGCMLGRIKAEILQDMIPWLMASLTPEEQHVAMFLWSMATKNTSFDEWLGEWWDGYIIAKATEGSNDTPLPTIDPLEVISKYLSEEVLNEIQEESSPNKSINLFQKDHTGDNVDPYNYNIDGKVKVHNAEQNNNECSKFTNQFHDSKKHARSRVTDITNLVNNGQSFQLIDKSEHYDRLLKLSQDDLEMAVRRVSRDSGLDPQKKSYIIQNLLMSRWIISQQISSTEVNMNSDGQEFPGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNEVSEPDHSIDRKSITKMMCMKCLVIQPISATCSTISCGNLSMAKYYCAICKLFEDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMVHTCREKHLDGNCPICHEYIFTSCSPVKALSCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFNMLDALLAEEEVPEELLGRTQVILCNDCEKKGAAPFHWLYHKCPYCGSYNTRVL* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0866 1263 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 24 1263 - -
Lan12g0866 1263 SUPERFAMILY RING/U-box 1145 1204 - -
Lan12g0866 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1151 1201 IPR013083 -
Lan12g0866 1263 Pfam CHY zinc finger 1026 1103 IPR008913 GO:0008270
Lan12g0866 1263 ProSiteProfiles Zinc finger RING-type profile. 1157 1199 IPR001841 -
Lan12g0866 1263 CDD RING-H2_Pirh2 1156 1199 - -
Lan12g0866 1263 CDD Hr-like 60 170 - -
Lan12g0866 1263 Gene3D - 1228 1263 - -
Lan12g0866 1263 Gene3D nmb1532 protein domain like 294 444 - -
Lan12g0866 1263 Gene3D nmb1532 protein domain like 607 777 - -
Lan12g0866 1263 Gene3D nmb1532 protein domain like 32 190 - -
Lan12g0866 1263 CDD Hr-like 612 758 - -
Lan12g0866 1263 SUPERFAMILY CHY zinc finger-like 1017 1084 IPR037274 GO:0008270
Lan12g0866 1263 SMART ring_2 1157 1198 IPR001841 -
Lan12g0866 1263 SUPERFAMILY Zinc hairpin stack 1094 1148 IPR037275 -
Lan12g0866 1263 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1263 - -
Lan12g0866 1263 Pfam Zinc-ribbon 1204 1261 IPR039512 -
Lan12g0866 1263 ProSiteProfiles Zinc finger CTCHY-type profile. 1093 1156 IPR017921 -
Lan12g0866 1263 ProSiteProfiles Zinc finger CHY-type profile. 1019 1090 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0866 Lan-Chr12 15739374 15751132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0866 32 853 C2H2 Transcription Factor Family AT3G18290 32.435 1.72e-131 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0866 K16276 - gmx:100802706 1984.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0866 12 15739374 15751132 Lan1g1003 1 20467203 20470919 LSH
Lan12g0866 12 15739374 15751132 Lan1g1993 1 35109573 35120700 LSH