Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0860 ATGTCTCGTGCTTTAACCGCCGCTGACTCCGCCGTCTCCGGCGACCTCCCTGCCGGCGAGTTTATGCTGTTCGGGGTTAGGGTTGTGGTTGATTCCATGAGGAAGAGTGTGAGTATGAACAATCTCTCTCAGTATGAGCTTCCTCCAGACGCCTCTTCCAACAATAACAAAGATACTGTCGCCGCCGGTTATGCCTCCGCCGATGACGCCGTGCCTCACAACTCAGCCAAGCTCCGCGAGCGCAAGCGAGGGGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGAATCTCCAGGAACTATGTCAAGACCCGGACCCCTACCCAGGTTGCTAGCCATGCTCAGAAATACTTTCTCCGCCGCACCAACCTCAATCGCCGTCGCCGTAGATCTAGCCTCTTTGATATCACCACTGACACAGTTCCAATGGAGGAAGAACAGATCCAGAATCAAGATAGCTTGTCTCATTTACAGTCTGTGTATCCTGCAGCCATTGAAACTACCAACACAAATAGATTTCAAATGATGCCAATTTATCCGATGCATGTTGGATCTGGAATGTTTTCAGTCAAGGCTGAGAATCCAATGGAAGAACTCACTTTGGGACAAAGAATCATGGAACACAATGTTCCAACTAACCAAGTTCTTCCAATTCCTAAAGCTTCCACAGTGTCTGATATTGCCTCCAATTTAAGCTCAACTATTGACCCACCAAAACTGTCCCTTGGGCTATCTTTCTCTTCTGATCAAAGGCAAACATCCTCAAGACATTCACCTTTGTATGCATTGTCTCATTTAAATAACGGAGATAGCATCATAAGCGTTGCTTAA 870 0.4793 MSRALTAADSAVSGDLPAGEFMLFGVRVVVDSMRKSVSMNNLSQYELPPDASSNNNKDTVAAGYASADDAVPHNSAKLRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDTVPMEEEQIQNQDSLSHLQSVYPAAIETTNTNRFQMMPIYPMHVGSGMFSVKAENPMEELTLGQRIMEHNVPTNQVLPIPKASTVSDIASNLSSTIDPPKLSLGLSFSSDQRQTSSRHSPLYALSHLNNGDSIISVA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0860 289 Gene3D - 85 137 - -
Lan12g0860 289 PANTHER KIN2 16 289 - -
Lan12g0860 289 CDD SANT 86 131 IPR001005 -
Lan12g0860 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Lan12g0860 289 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Lan12g0860 289 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Lan12g0860 289 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Lan12g0860 289 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 16 289 - -
Lan12g0860 289 ProSiteProfiles SANT domain profile. 82 135 IPR017884 -
Lan12g0860 289 SMART sant 83 133 IPR001005 -
Lan12g0860 289 SUPERFAMILY Homeodomain-like 81 135 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0860 Lan-Chr12 15679542 15681766 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan12g0860 Myb_DNA-binding 7.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0860 - - aip:107632799 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0860 12 15679542 15681766 Lan1g1388 1 23592596 23594870 LSH
Lan12g0860 12 15679542 15681766 Lan1g1985 1 35038625 35040709 LSH