Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0856 ATGACTACCGCCGGCGATGTTTTCAGGCATACTCTCCCGGAATTGCTAGAGGAATCACCTTCCGGTGCAGCAGAGCTCCACGTTCTTGCTGTCGATGATAGCTTCGTCGATCGCAAGGTCATTGAACGCTTGCTCAAGGTTTCATCTTGCAAAGTAACTGTTGTAGAAAGTGGAACTAGAGCTCTTCAATACTTGGGGTTGGATGGAGACAAAAGCTCATTTGGCTTTGATAGTGTGAAGGTTAATATGATAATCACCGATTATTCCATGCCTGGGATGACAGGATATGAACTACTCAAAAAGATCAAGCAGGAGTCGTCTGTTTTTAGAGAGATTCCGGTGGTGATCATGTCTTCAGAGAATATCTTGACTCGAATTGATAGGTGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTCAAGTTGGCAGATGTAAGACGCTTAACAGATTTCATTATGAGAGGTGAAGTGAAGGAAGATGAGAAAACATCACAGAAAAGAAAGCTGTCTGATAATTGCGGTCCACCTCTATCAACTACACTCCCATCAGTTTCTCAACCAAGAGATTCATCATCATCAGGACTTTCACCACTATCACCTTCCTCATTGTCCTCCAAAAAATCTAGATTGTGA 639 0.4351 MTTAGDVFRHTLPELLEESPSGAAELHVLAVDDSFVDRKVIERLLKVSSCKVTVVESGTRALQYLGLDGDKSSFGFDSVKVNMIITDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENILTRIDRCLEEGAEEFLLKPVKLADVRRLTDFIMRGEVKEDEKTSQKRKLSDNCGPPLSTTLPSVSQPRDSSSSGLSPLSPSSLSSKKSRL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0856 212 MobiDBLite consensus disorder prediction 171 212 - -
Lan12g0856 212 SUPERFAMILY CheY-like 26 160 IPR011006 -
Lan12g0856 212 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Lan12g0856 212 Gene3D - 26 192 - -
Lan12g0856 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 212 IPR045279 GO:0009736
Lan12g0856 212 SMART REC_2 26 151 IPR001789 GO:0000160
Lan12g0856 212 CDD REC_typeA_ARR 28 150 - -
Lan12g0856 212 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
Lan12g0856 212 MobiDBLite consensus disorder prediction 159 212 - -
Lan12g0856 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 9 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0856 Lan-Chr12 15621542 15624155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0856 26 174 Response Regulator Gene Family AT3G48100 75.333 2.61e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan12g0856 Response_reg 4.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0856 K14492 - gmx:100527518 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0856 12 15621542 15624155 Lan1g1393 1 23659532 23661919 LSH