Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0854 ATGTCTTCTTCAACCACAAAGCCTCATACTTATAATCGCAAACAAAAATCCTTAGGCCTCTTATGCACTAATTTCATGAACTTGTATAATCGAGATGAGATCCACTTGATTGGTCTCGATGATGCCGCAGCTAGGTTAGATGTAGAAAGGAGGCGGATCTATGACATCGTCAACGTTTTAGAGAGTATCGGTGTTCTTTCAAGAAAGGCAAAGAATCAATACACTTGGAAAGGCTATGCTGCTATTCCTGGTGCTTTACATGAACTCAAGGAAGAGGCTTTAAGGGAGAGGTTAGAGGGTTCGCAGGGAGTAAATGACAATGCAAAAGTGTGGGATGATGAGGATGACGATGAAACCCTATCCAATTCGGGTAGCCAGAATGACAAGAGCATTCCTAATTCTGATGCTCCCAAATTGCAGAAGAATGATAATAGAAGGGAAAAATCATTAGCACTGCTAACTCAGAATTTTGTCAAGCTCTTTATTTGCTCTAATATGGAACTGATCTCCCTTGATGACGCTGCAAAGTTGTTGCTTGGGGATGCCCATAATTCATCCATCATGAGAACGAAAGTTAGACGCCTATATGACATTGCAAATGTGTTATCTTCCATGAACCTTATTGAAAAGACCCATACAGCAGATACAAGAAAACCAGCATTCAGGTGGCTTGGTTTGAAAGAAAACCAGAATTCAAATCTCAACAATTCTAGGAAAAGGGCGTTTGGAACTGATATCACAAACATCGATTTTAAGAGGAATAAGGTGGATGTATTCACTGATGGAGAGTTTAGCCATAACCCTAGGGAACAAAAGGAACTGGAACATGTTAGTGGCATAAATCAGGTAGATAAAAGCAATTTAAAACAATGCACAAAACAGAGTTCAAGTAGCTATCAGTTTGGTCCTTTTGCTCCAGCCAATGTGCACAAAGTTGGAGCTTCTGAGAATAATGATGTCAAGCAGGTTAACGATTGGGAAAGTCTTGCAACTGTCCATCGTCCTAACTATCAAAATGAAGGTTTGAAAGAACTCTTCTCCCATTACATGGAAGCATGGAAATCGTGGAACTCTGAAGTAGCTGGAAAGAAGCCAGTCCAAAATTTGTAA 1110 0.4009 MSSSTTKPHTYNRKQKSLGLLCTNFMNLYNRDEIHLIGLDDAAARLDVERRRIYDIVNVLESIGVLSRKAKNQYTWKGYAAIPGALHELKEEALRERLEGSQGVNDNAKVWDDEDDDETLSNSGSQNDKSIPNSDAPKLQKNDNRREKSLALLTQNFVKLFICSNMELISLDDAAKLLLGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGLKENQNSNLNNSRKRAFGTDITNIDFKRNKVDVFTDGEFSHNPREQKELEHVSGINQVDKSNLKQCTKQSSSSYQFGPFAPANVHKVGASENNDVKQVNDWESLATVHRPNYQNEGLKELFSHYMEAWKSWNSEVAGKKPVQNL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0854 369 Pfam E2F/DP family winged-helix DNA-binding domain 14 78 IPR003316 GO:0005667|GO:0006355
Lan12g0854 369 Pfam E2F/DP family winged-helix DNA-binding domain 147 225 IPR003316 GO:0005667|GO:0006355
Lan12g0854 369 SMART E2F_TDP_2 145 225 IPR003316 GO:0005667|GO:0006355
Lan12g0854 369 SMART E2F_TDP_2 13 78 IPR003316 GO:0005667|GO:0006355
Lan12g0854 369 MobiDBLite consensus disorder prediction 97 142 - -
Lan12g0854 369 Gene3D - 140 227 IPR036388 -
Lan12g0854 369 Gene3D - 7 80 IPR036388 -
Lan12g0854 369 PANTHER TRANSCRIPTION FACTOR E2F 3 360 IPR015633 GO:0000978|GO:0006357
Lan12g0854 369 SUPERFAMILY "Winged helix" DNA-binding domain 147 226 IPR036390 -
Lan12g0854 369 SUPERFAMILY "Winged helix" DNA-binding domain 12 76 IPR036390 -
Lan12g0854 369 MobiDBLite consensus disorder prediction 123 138 - -
Lan12g0854 369 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 3 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0854 Lan-Chr12 15611186 15614361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0854 9 368 E2F-DP Transcription Factor Family AT3G48160 55.615 3.69e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan12g0854 E2F_TDP 1.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0854 K09391 - gmx:100795252 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0854 12 15611186 15614361 Lan1g1981 1 34986231 34993258 LSH