Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0843 ATGACTCATACAAATTCCGATCAAAGCCGCCGGCGCATTCTATCATACACGGCGGTGCACCCATGCGAAGATATATCTCCGGCAACCCTTCTCGCTTCTCTCATCATTCTCTCACAAAACATATGCGACTTTGAACACAACTTCTTCCAAACCCAAAAACGAAACGCAAGAGAAACAATACGCCAAGTTAATATCATCCTCATATTTCTCCACGAAATTCAAAATCGTCGCCTTTTTCTACCTAACTCCATAATCCTCTCTTTTTCAGAACTTCACTTCACGTGCCAAAAAATCCATTTTTTGATGCAAGATTGTACCCGTGAAGGTGCACGACTCTTGCTGCTAGCGAAGTCCAACCACGTTGCTTCTCAATTCAGGTCACTTATTCGTGCTTCTTCCATTGCCCTTGATGTTTTACCTCTCAATAGAATCGAGGTTTGTGACGATGTTAAAGAGTTAGTAGAGTTAGTAGCAAAGCAAGCGAGGAAAGCTAAGATGGAACTTGACCCTAACGATGAACGTGAAAGTAGAAAACTTGATTCAGTTTTGCGACAGTTTGAAAAGGGAATCGAACCCGACGTGAAAACCATGCAGGAAATTCTTAAATACCTCGAAATCAAAACATGGTCTGATTGTAACAAAGAGATCAAAGTCTTGGAAGATGAAATTGAGTTTGATTGTGATGAGCGAGAGGTTCCGTTATTAAGCAGCTTGATGGGGTTCATGAACTACTCTAGGGTAGTCATATTCGAAAAACTAGATTTTTTCAACACTGGTCAATCACCTTCAAGGTGCAGCACAGAGATGATGATAACATGTATAAATCTCGAAGATTTTCGATGTCCAATTTCCCTCGAACTCATGATGGATCCAGTAACCGTTTCAACTGGTCAAACCTATGATCGAATCTCAATTAAAAAATGGCTCAAAGCAGGGAACATGATATGCCCCAAAACAGGGGAGAAGCTAACAAACACAGAATTAGTCCCTAACACAAGTCTCAAAAGACTTATCCAACAGTTCTGTATGGACAATGGTGTCTCTCTATCGATCTCAGGCCGCGACATATCTAGGACTATCGTGCCAGGTAGTTCAGCTGCAGCGCATGCCACACAGTTTCTTTCATGGTTTCTCACTCATAAACTCGTGTTCGGAACTGAGGAGCAAATGAACAAAGCTGCATATGAAATTCGCTTGCTTGCAAGGTCTAATATTTTCAATAGAGCGTGCTTGATTGAAGTTGGAACTATCCCTCCTTTGCTTGATCTTTTGGGAAGTAATGATAAATCAACACAAGAGAATGCAATATCTGCTTTGTTGAAGCTCTCAAAGCACGCCATGGGACCAGGAATTATAATGGAAAATCGCGGTTTAGTACCAATCCTTATGGCTCTCAAGAAAGGGGTTACTTTGGAAATTCGCCAAATTGCAGCAGCTATAATATTTTATCTTTCTTCAGTAAAAGAATATAGAAAAGAAATAGGAGAAAACCATGAAGTGATTCCAGGTTTAGTAGAGTTGGTTAAGGAAGGAACAAGCCATGGGAAAAAGAATGCAGTGGTTGCAATTTTCGGGCTTCTTTTGCATCCTAGCAATCATATCAGAGTGATTCAATCAGGTTCTGTTCCTGCACTTGTTGCAATTTTGGCCTCCTCAGATAAACATGAACTTATAACTGAATCTTTAGCTGTTCTTGCTGTGCTTGCTGAGAAAGTGGATGGAGCAAATGCTATATTGAAAGCTACTAATTCATTGCAGTTAATCACTGGGTTGTTGCAATCTGTTACATCTAATGCAGGGAAAGAACATTGTGCTTCAATTTTGTTGTCCCTTTGTGTTAATTTTGGTTCTGATGTAGTTGGTGTTCTTTCTAAGGACACAACATTGATGCCTTTGCTTTATTCACTTCTAACTGATGGTACTTCTCATGCTTCCAAAAAAGCACGGTTTCTTATCAAAGTTCTGCATGATTTCAATGAAACAAGAGCTTCTGGTGCATTGAAGGGATCCTCAGTTCCACAGGAACGAGCCACTCAACTTTGCTTTGATGAGAGGGTTTGA 2061 0.4042 MTHTNSDQSRRRILSYTAVHPCEDISPATLLASLIILSQNICDFEHNFFQTQKRNARETIRQVNIILIFLHEIQNRRLFLPNSIILSFSELHFTCQKIHFLMQDCTREGARLLLLAKSNHVASQFRSLIRASSIALDVLPLNRIEVCDDVKELVELVAKQARKAKMELDPNDERESRKLDSVLRQFEKGIEPDVKTMQEILKYLEIKTWSDCNKEIKVLEDEIEFDCDEREVPLLSSLMGFMNYSRVVIFEKLDFFNTGQSPSRCSTEMMITCINLEDFRCPISLELMMDPVTVSTGQTYDRISIKKWLKAGNMICPKTGEKLTNTELVPNTSLKRLIQQFCMDNGVSLSISGRDISRTIVPGSSAAAHATQFLSWFLTHKLVFGTEEQMNKAAYEIRLLARSNIFNRACLIEVGTIPPLLDLLGSNDKSTQENAISALLKLSKHAMGPGIIMENRGLVPILMALKKGVTLEIRQIAAAIIFYLSSVKEYRKEIGENHEVIPGLVELVKEGTSHGKKNAVVAIFGLLLHPSNHIRVIQSGSVPALVAILASSDKHELITESLAVLAVLAEKVDGANAILKATNSLQLITGLLQSVTSNAGKEHCASILLSLCVNFGSDVVGVLSKDTTLMPLLYSLLTDGTSHASKKARFLIKVLHDFNETRASGALKGSSVPQERATQLCFDERV* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0843 686 Gene3D - 351 668 IPR011989 -
Lan12g0843 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 349 IPR013083 -
Lan12g0843 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Lan12g0843 686 Pfam U-box domain 277 345 IPR003613 GO:0004842|GO:0016567
Lan12g0843 686 CDD RING-Ubox_PUB 279 321 IPR045210 -
Lan12g0843 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 583 IPR000225 GO:0005515
Lan12g0843 686 SUPERFAMILY RING/U-box 277 347 - -
Lan12g0843 686 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Lan12g0843 686 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Lan12g0843 686 SUPERFAMILY ARM repeat 386 655 IPR016024 -
Lan12g0843 686 PANTHER OS07G0532750 PROTEIN 8 665 - -
Lan12g0843 686 Pfam Armadillo/beta-catenin-like repeat 407 443 IPR000225 GO:0005515
Lan12g0843 686 PANTHER U BOX DOMAIN-CONTAINING 8 665 - -
Lan12g0843 686 SMART arm_5 445 486 IPR000225 GO:0005515
Lan12g0843 686 SMART arm_5 529 570 IPR000225 GO:0005515
Lan12g0843 686 SMART arm_5 403 444 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0843 Lan-Chr12 15513892 15516192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0843 1 662 U-box Gene Family AT1G60190 40.653 9.08e-160 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0843 - - mtr:MTR_4g107010 900.968