Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0841 ATGAAGGAAAGCAGTGATGGGTTTGTGAGAGCAGATCAGATTGATCTGAAGAGCATAGATGAACAGTTAGAGAGGCATCTCAACAAGGTGTTGACTATGGAAAAGAAAAAACATATTGAAGATGAAGATGGTAGTTATGTTCATAGACACAGTGGCAGTGCTAGTAATTCTCCTATTGCTGCTGTTTCTGCAACTAAATTCAGAAGTCCCTTAAAGAAGCAAGAGTGGGAGATTGAGCCTTCTAAATTGATTATCAAGAGTGTTATAGCTCGTGGTACTTTTGGTACAGTTCATCGTGGTATCTATGATACTCAAGATGTTGCTGTTAAATTGCTGGACTGGGGTGAAGAAGGCCAAAGAACTGAAGCTGAAGTTGCTTCCCTGAGGGCGGCTTTTATACAAGAAGTCGCTGTTTGGCATAAACTTGATCACCCTAATGTCACTAAATTCATAGGGGCAACAATGGGGTCTGCAGAATTACAGATACAAACTGATAATGGTCTAATCGGCATGCCAAGCAACGTGTGTTGTGTCGTTGTGGAGTATCTTCCTGGAGGTACACTGAAAACTTTCCTAATAAAGAACAGGAAGAGGAAGTTAGCCTTTAAGGTTGTCATCCAGCTTGCGGTTGATCTTGCTAGAGGGCTGAGCTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAAAACATGCTGTTGGATAAGTCACGCACAGTTAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAGGCATCAAATCCTAATGATATGACCGGGGAGACTGGTACTCTTGGTTACATGGCCCCAGAGGTTCTAAATGGAAATCCCTATAACAGGAAATGTGATGTGTATAGTTTTGGTATCTGTTTATGGGAAACATATTGTTGTGACATGCCATATCCTGACTTGAGTTTCTCGGAAATTACTTCAGCCGTTGTTCGCCAGAATCTGAGACCCGAAATACCAAGATGTTGTCCAAGTTCTCTAGCAAATGTAATGAAGAAATGCTGGGATGCCAGTCCCGATAAGCGCCCGGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACACATCCAAAGGTGGAGGTATGATCCCTCCAGATCAGCAGGACGGTTGTCTTTGCTTCCGCAGGCGTAGAGGGCCTTGA 1161 0.4341 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTMEKKKHIEDEDGSYVHRHSGSASNSPIAAVSATKFRSPLKKQEWEIEPSKLIIKSVIARGTFGTVHRGIYDTQDVAVKLLDWGEEGQRTEAEVASLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDNGLIGMPSNVCCVVVEYLPGGTLKTFLIKNRKRKLAFKVVIQLAVDLARGLSYLHSQKIVHRDVKTENMLLDKSRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPPDQQDGCLCFRRRRGP* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0841 386 Pfam Protein tyrosine and serine/threonine kinase 85 357 IPR001245 GO:0004672|GO:0006468
Lan12g0841 386 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 380 - -
Lan12g0841 386 SMART serkin_6 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0841 386 SUPERFAMILY Protein kinase-like (PK-like) 61 357 IPR011009 -
Lan12g0841 386 Gene3D Transferase(Phosphotransferase) domain 1 183 368 - -
Lan12g0841 386 Coils Coil 16 36 - -
Lan12g0841 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Lan12g0841 386 Gene3D Phosphorylase Kinase; domain 1 71 166 - -
Lan12g0841 386 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 380 - -
Lan12g0841 386 CDD STKc_MAP3K-like 89 357 - -
Lan12g0841 386 PRINTS Tyrosine kinase catalytic domain signature 180 193 IPR001245 GO:0004672|GO:0006468
Lan12g0841 386 PRINTS Tyrosine kinase catalytic domain signature 218 236 IPR001245 GO:0004672|GO:0006468
Lan12g0841 386 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Lan12g0841 386 PRINTS Tyrosine kinase catalytic domain signature 328 350 IPR001245 GO:0004672|GO:0006468
Lan12g0841 386 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0841 Lan-Chr12 15503807 15509897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0841 6 386 MAP Kinase Kinase Kinase AT3G22750 64.416 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan12g0841 PK_Tyr_Ser-Thr 4.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0841 - - gmx:100807921 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0841 12 15503807 15509897 Lan1g1408 1 23816867 23823212 LSH
Lan12g0841 12 15503807 15509897 Lan1g1969 1 34912985 34916608 LSH