Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0830 ATGGACCTTGAGACAAATCAGAATGAAAATTATGCCTCACAACCAATGCATTTGCAAGAAAACTACTTGAAACAACCCAGCAAGAAAGAAGAGCTTCCTTTCGAGACTCCTTCGTCGCAGGAGTTCATGCAAGATTTTCAGCATATTGATCAGTTTCATCATACTAATGCCTCCTTGCCCAATCAAGTTTTTGGGATCCAAACTCAAAATTTTGATCCTTTTGTTAATATAACATGTGGGTGTTCACAGTCAGATTTTGATGGTTATGAGTGCAAGCCTTTTGTTGAGAATGATGGTAGTGGTAGTCATGCTCATGTTGTGGACATTTTCCAGTATGAAGGCTATAGTTTGAACTTCCCTAGGAGAAATCAAATGGATATTATGCCTTCAAACCAAAGCTATTTGCCCTTTAATCCTTTAGAAACCAAGTCTATGAACTTTGCTGCACCTGATGAAGTCTCATGCATATCACCAGCAAATTATTACAGAAGAGTTGGCTTGAATAGAAATAATAAGACATCTCCAATAATTCGAAGGTCGTGTAAAGTTAAGAAGAAGTCCAACATAGTGAAGGGGCAATGGACTGAAGATGAAGACAGATTATTGATTCAGTTGGTGGAACAATATGGAGTGAGGAAGTGGGCTCATATTGCTCAAAACTTGCCTGGCAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCAGACATTAAGAAGGAAGTATGGACTGATGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCTGAGATTGCAAAAAGATTACCAGGAAGAACTGAGAACTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAATATTCCAAAAGAAAATGCCGCTCAAAGTACCCTAGAGGCACAATTCTTCAGGATTATATCAAGAGCTTGAACTTGGACAAAAACCCTCCAATAGACTATAGAAAACGTTCTTCTGCTAATGCTATGAGAATAAAAGCTAGCACAAGCAAAGCAGCAACATCAACTACTCAGCCACACAGTACTAATCAAGTTAGTTCCAATGACCGATTGGTGCCGAATTATGAGTTTAATGAGGTCTCAGATTTTTGTTTTGATGATAATATGTTTCAAGAGGGGTGTAGTATTGATTCTTTGCTAGATGATATGCCATGTGCTCCTACTATGGATGAGAAAGATTTTGATGGAAAAATGCAAAGTGCTTCTAAAATGAAGGGAAAACAAGTTGTTAATGTTGAAGAGGGTCATCACTTTGAGACAGAGATGCCACAAGAGATGGAGGGGAATGTAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCTCAGGTTAATCAAACTCATGATGACTAA 1383 0.3861 MDLETNQNENYASQPMHLQENYLKQPSKKEELPFETPSSQEFMQDFQHIDQFHHTNASLPNQVFGIQTQNFDPFVNITCGCSQSDFDGYECKPFVENDGSGSHAHVVDIFQYEGYSLNFPRRNQMDIMPSNQSYLPFNPLETKSMNFAAPDEVSCISPANYYRRVGLNRNNKTSPIIRRSCKVKKKSNIVKGQWTEDEDRLLIQLVEQYGVRKWAHIAQNLPGRIGKQCRERWHNHLRPDIKKEVWTDEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTILQDYIKSLNLDKNPPIDYRKRSSANAMRIKASTSKAATSTTQPHSTNQVSSNDRLVPNYEFNEVSDFCFDDNMFQEGCSIDSLLDDMPCAPTMDEKDFDGKMQSASKMKGKQVVNVEEGHHFETEMPQEMEGNVVKKELDLVEMMSQVNQTHDD* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0830 460 MobiDBLite consensus disorder prediction 325 358 - -
Lan12g0830 460 Gene3D - 190 242 - -
Lan12g0830 460 CDD SANT 194 237 IPR001005 -
Lan12g0830 460 ProSiteProfiles Myb-like domain profile. 238 288 IPR001005 -
Lan12g0830 460 PANTHER BNAC07G50190D PROTEIN 139 387 - -
Lan12g0830 460 SMART sant 190 239 IPR001005 -
Lan12g0830 460 SMART sant 242 290 IPR001005 -
Lan12g0830 460 SUPERFAMILY Homeodomain-like 188 284 IPR009057 -
Lan12g0830 460 CDD SANT 246 288 IPR001005 -
Lan12g0830 460 Gene3D - 245 302 - -
Lan12g0830 460 PANTHER MYB PROTEIN-RELATED 139 387 - -
Lan12g0830 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 241 IPR017930 -
Lan12g0830 460 Pfam Myb-like DNA-binding domain 191 237 IPR001005 -
Lan12g0830 460 Pfam Myb-like DNA-binding domain 244 285 IPR001005 -
Lan12g0830 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 292 IPR017930 -
Lan12g0830 460 MobiDBLite consensus disorder prediction 332 358 - -
Lan12g0830 460 ProSiteProfiles Myb-like domain profile. 186 237 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0830 Lan-Chr12 15419093 15420997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0830 28 400 MYB Transcription Factor Family AT4G18770 46.283 2.49e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan12g0830 Myb_DNA-binding 7.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0830 K09422 - gmx:100816653 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0830 12 15419093 15420997 Lan1g1415 1 23896517 23898633 LSH
Lan12g0830 12 15419093 15420997 Lan1g1961 1 34851290 34851992 LSH