Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0817 ATGGATAACTACTACCACCACCATTTTGACAACAATGATGCACTCTTACCACCTGGTTTTCGTTTCCATCCCACTGATGAGGAGCTTATCACATACTATCTCCTCAAGAAGGTCCTAGACAACACCTTCACTGGTAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGCAGCTCCCAGGGAAAGCGAAGATGGGTGAGAAGGAGTGGTACTTCTTTAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGTACTAATAGGGCAACAGAAAGCGGTTATTGGAAAGCTACTGGGAAAGACAGGGAAATCTATAGCTCCAAAACTTGTGCACTTGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCTTTACCTCTCTAGGAGCTCCAAGGATGAATGGGTGATATCCCGGGTGTTCGAGAAGAACAACAGTGGTGGTGGCTCCACCGTGTCTGCCACCGCCACAAGCAGTTCCAATAAGACTAGAGTTAGCACCTCATCTGCTAGCATGAGCCTAGGCCTTGAACCCGGTTCACCTTCTTCCATTTACCTTCCACCACTGCTAGACTCTTCTCCATACACCACCAGCAGCACAGCCGCATTCAACTACCGTGATGGCTGCTCCTACGACAGCACCACCGTCCCCCAAATAGAGCACGTGTCCTGTTTCTCCACAATCTCAGCCAACAACTTTAACAATGAAACCTTTGACCTTGTTCCTCCTCCGCCGCTGCTGACTCATGAGAATCTTGATCCTTTCACTCGGTTCCAAGGCAATGTTGGTGTCTCAGCCTTCCCTAGCCTAAGGTCACTCCAAGATAACCTCCAGATGCCGTTATTTTTCTCCTCCGCCCCACTCCACCTGGACGGTTCCAGTGACATGGCTGCCGCCCCGAACTGGCCGATGTCCGAGGAGCCGAAGTCTGTGGTGGCTGATGGTAGCTCCAGCATGGGGCTGGGGCATTCCGAGCTTGATTGCATTTGGAGCTATTGA 1074 0.4991 MDNYYHHHFDNNDALLPPGFRFHPTDEELITYYLLKKVLDNTFTGRAIAEVDLNKCEPWQLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKATGKDREIYSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFAYLYLSRSSKDEWVISRVFEKNNSGGGSTVSATATSSSNKTRVSTSSASMSLGLEPGSPSSIYLPPLLDSSPYTTSSTAAFNYRDGCSYDSTTVPQIEHVSCFSTISANNFNNETFDLVPPPPLLTHENLDPFTRFQGNVGVSAFPSLRSLQDNLQMPLFFSSAPLHLDGSSDMAAAPNWPMSEEPKSVVADGSSSMGLGHSELDCIWSY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0817 357 MobiDBLite consensus disorder prediction 171 200 - -
Lan12g0817 357 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lan12g0817 357 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Lan12g0817 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 354 - -
Lan12g0817 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 7 354 - -
Lan12g0817 357 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Lan12g0817 357 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0817 Lan-Chr12 15308007 15311388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0817 4 357 NAC Transcription Factor Family AT5G53950 53.281 2.20e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan12g0817 NAM 2.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0817 - - gmx:100788671 475.322