Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0813 ATGACGACGAGGTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTCAGCGCCGGTCATGGTCGTATAGGAAAGCACCGCAAGCATCCCAGTGGACGTGGTAACGCCGGTGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTCCCCAATCGTCAACATCGATAAACTCTGGTCACTGGTTCCTCAGGAGGTGAAGGATAAGGCTGCGAAGGAGAAGGGTAAGGCACCGTTGATCGATGTAACGCAGTTCGGGTTCTTCAAGGTTTTGGGTAAAGGTGTTTTGCCTGAGAACCAACCTATTGTGTTGAAGGCGAAGCTTGTTTCTAAGATCGCGGAGAAGAAGATCAAGGAGGCTGGTGGAGCTGTTATTCTCACTGCTTGA 447 0.5078 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPSGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNIDKLWSLVPQEVKDKAAKEKGKAPLIDVTQFGFFKVLGKGVLPENQPIVLKAKLVSKIAEKKIKEAGGAVILTA* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0813 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 144 IPR021131 -
Lan12g0813 148 MobiDBLite consensus disorder prediction 1 35 - -
Lan12g0813 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Lan12g0813 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Lan12g0813 148 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 148 - -
Lan12g0813 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Lan12g0813 148 Gene3D - 58 148 - -
Lan12g0813 148 MobiDBLite consensus disorder prediction 1 37 - -
Lan12g0813 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0813 Lan-Chr12 15261114 15261838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0813 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 85.135 5.36e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0813 K02900 - gmx:100798197 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0813 12 15261114 15261838 Lan1g1434 1 24192958 24193510 LSH
Lan12g0813 12 15261114 15261838 Lan1g1952 1 34774347 34775034 LSH