Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0799 ATGTCTATCACAACCATGTCTCTCTTCAAATGTCTCACAATGGCAGAATCATCTCTTATCTCTCTTCCATCTCTCTCCAAACCCAATTACCCTTTTCTCCCAAATCATTCTAAGCACAACAAGCTGCAATTTTCATGCTCCCACTCTTCACTCTCTCGTTATCTCAGCATCAGGAAAACCCACAATTCCCCTGTGCTGACTTTTGTAGCCCAAACTTCAGATTGGGCTCAGAAGGAAGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGAAGCATTGTGGGAGAACCAAGGAGAACCCAATTGGGAAAATCAAGATGCTGATGAGGAATCAGGAGAAGGAGAGGGTGCTCAAGATGGGATCTTTGAGGTGAGGGAGGAACCATCTGATGATGCAAAAATCTATGTTGGGAATTTGCCATTTGATGTTGACAGTGAGAAATTGGCCATACTTTTTGAGACCGCTGGGACTGTGGAGATTGCAGAGGTCATTTATAATCGGGCAACTGACCAAAGTCGCGGGTTTGGATTTGTTACCATGAGTACAGCTGAAGAAGCTGAGAAGGCTGTGGAGAAGTTCAGTGGCTATGATTTTAATGGAAGACTCTTGACTGTTAATATTGCTGCTCCAAGAGGAGCAAAGCCTGAGCGCTCACCACGTGCCTTTGATAATACCTTAAGAGTCTATGTTGGCAACTTGCCATGGAGTATTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCTCGGGTAGTGTACGACAGAGAGACCGGTCGGTCACGTGGTTTTGGCTTTGTCACATTTTCCAGCGAGGCTGAAATCAATGATGCTATTGCTGCTCTTGATGGTCAGAGCTTGGACGGGAGGGCAATCAGAGTGAATGTTGCTGAGGATAGGCCCAGGCGTAGCTCCTTTTGA 936 0.4594 MSITTMSLFKCLTMAESSLISLPSLSKPNYPFLPNHSKHNKLQFSCSHSSLSRYLSIRKTHNSPVLTFVAQTSDWAQKEEGEGEGEGEGEEALWENQGEPNWENQDADEESGEGEGAQDGIFEVREEPSDDAKIYVGNLPFDVDSEKLAILFETAGTVEIAEVIYNRATDQSRGFGFVTMSTAEEAEKAVEKFSGYDFNGRLLTVNIAAPRGAKPERSPRAFDNTLRVYVGNLPWSIDNARLEQIFSEHGKVENARVVYDRETGRSRGFGFVTFSSEAEINDAIAALDGQSLDGRAIRVNVAEDRPRRSSF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0799 311 SUPERFAMILY RNA-binding domain, RBD 219 309 IPR035979 GO:0003676
Lan12g0799 311 SUPERFAMILY RNA-binding domain, RBD 126 220 IPR035979 GO:0003676
Lan12g0799 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 304 IPR000504 GO:0003723
Lan12g0799 311 CDD RRM_HP0827_like 133 210 - -
Lan12g0799 311 PANTHER RIBONUCLEOPROTEIN 1 311 - -
Lan12g0799 311 MobiDBLite consensus disorder prediction 75 116 - -
Lan12g0799 311 SMART rrm1_1 133 206 IPR000504 GO:0003723
Lan12g0799 311 SMART rrm1_1 227 300 IPR000504 GO:0003723
Lan12g0799 311 CDD RRM_HP0827_like 227 303 - -
Lan12g0799 311 MobiDBLite consensus disorder prediction 102 116 - -
Lan12g0799 311 Gene3D - 69 215 IPR012677 -
Lan12g0799 311 Gene3D - 216 310 IPR012677 -
Lan12g0799 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 298 IPR000504 GO:0003723
Lan12g0799 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 203 IPR000504 GO:0003723
Lan12g0799 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Lan12g0799 311 PANTHER OS02G0815200 PROTEIN 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0799 Lan-Chr12 15181448 15184185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0799 130 308 Eukaryotic Initiation Factors Gene Family AT3G16380 36.649 3.07e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0799 - - cpap:110823065 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0799 12 15181448 15184185 Lan1g1449 1 24443717 24447130 LSH