Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0794 ATGACCACTTCACTCTCTTTGTTCTTCTTCCTCTTCTCTCTCCTCACCTTAACCACACTCATTTCCTCTTCCCCACTTCAGGACCCTGAATTGGTGTCACAAGAGGTGAACAGGGAAATCAATGCCTCTATGGCTAGGAGGAACTTGGGGTACCTTTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCTAACTGGGAAAATAACAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTTGGCAAAAATGCAGTGGGTGGAAGGGATGGTAAGATATATGTGGTCACTGACTCAGGTGATGATGACCCTGTGACCCCAAAGCCAGGGACACTTCGTTATGCTGTGATTCAAGATGAGCCATTATGGATCATATTTGCAAGGGACATGGTGATTAAGCTAAAGGAAGAGCTCATAATGAATTCATTCAAGACAATTGATGGAAGAGGTGCTAGTGTTCACATTGCTGGTGGTCCATGCATTACTATACAATATGTAACAAATGTTATAGTCCATGGGATTAATATACATGATTGTAAGCAAGGTGGTAATGCTATGGTGAGGGACTCCCCACAGCACTATGGGTGGAGGACCATATCGGATGGTGATGGTGTTTCCATCTTTGGAGGAAGTCACATATGGGTAGACCATTGTTCTTTGTCTAATTGCAATGATGGGTTAATTGATGCTATTCATGGATCCACAGCTATTACAATATCCAACAATTACATGACACACCATGACAAAGTCATGTTATTGGGTCACAGTGATACATATACTCAAGACAAAAACATGCAGGTCACAATAGCTTTCAATCACTTTGGAGAAGGTCTAGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTCCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAATAGGTTTGTTGCACCCAATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAATGAATGGAAAGAGTGGAATTGGAGGTCAGAAGGGGATTTGCTAGTAAATGGTGCCTTTTTTACACCATCAGGTGCTGGAGCTTCATCAATCTATGCAAGGGCTTCAAGCTTAAGTGCAAGGCCATCTTCACTTGTGGGGTCCATAACAACTGCTGCTGGTGCACTTAGCTGTAGGAAAGGTTCTCGTTGCTGA 1221 0.4373 MTTSLSLFFFLFSLLTLTTLISSSPLQDPELVSQEVNREINASMARRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAVGGRDGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGINIHDCKQGGNAMVRDSPQHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPENEWKEWNWRSEGDLLVNGAFFTPSGAGASSIYARASSLSARPSSLVGSITTAAGALSCRKGSRC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0794 406 PANTHER PECTATE LYASE 18-RELATED 3 403 IPR045032 GO:0030570
Lan12g0794 406 SMART amb_all 132 329 IPR002022 -
Lan12g0794 406 Gene3D - 57 399 IPR012334 -
Lan12g0794 406 SUPERFAMILY Pectin lyase-like 40 400 IPR011050 -
Lan12g0794 406 Pfam Pectate lyase 139 323 IPR002022 -
Lan12g0794 406 PANTHER PECTATE LYASE 3 403 - -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Lan12g0794 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0794 Lan-Chr12 15146655 15152242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0794 2 406 Polysaccharide Lyase AT5G63180 79.607 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0794 K01728 - gmx:100101868 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0794 12 15146655 15152242 Lan1g1454 1 24543802 24546999 LSH