Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0777 ATGGTTTCAACGAGACGCAGCGGTTCTCTCTCTGGCAACAATTCCAAAAGATCTTCTTCTTCTGAAGATAAAACTCCTTCACCCAAGCGTCAAAAGGTCGACAATGACGGTTCGTCGGAGAAACCGATGCCGGCGGCGGAAAATTCCAAGGAGTTACGTATTCCAGAGCCGGCGCCTGATCCCGGAGAACGTGGCTCCGGCGATGTTCAGATCGCTGGAGATGGTGCGATTGATGCTGTGAGCTCCGGCAAGGCTGATGCTACCGCCACTGCAGCTGTGGTGGCGCCGATTGCTGATGGTTCTTCGCCGATTGATAAGGCCAAGGGTGCGTTCTCTTCTTGGAGTGCGCATCAAAAGCCAAGTCCTAAGCTTGAGAGTTCAGCTCCATGGGGCAGGCTCTTGTCTCAGTCTGCACAGCATCCAAATGTCATCATTTCCCCACAGAACTTCACGATTGGTTCCAGTAGAAATTGCAGCCTGCCACTGAAAGATCAAACTATAAGTGGAAATTTATGCAAGATCAAGCACAGCCAGGGCAAGGGAAGTAATGTAGCTGTGCTAGAAAGTACAGGTAGCAAGGGATCTGTGCTAGTAAATGGGACGCTTGTCAAGAAGAACACCAACTGTGTTCTTAACTCGGGTGATGAGGTTGTTTTTGGTTTGCTGGGAAAACATTCTTATATTTTTCAGCAACTAAATACTGAGGTTGCAGTTAAGGGTGCAGAAGTCCAGAGTAGTGTTGGTAAATTTCAGCAGATTGAAAGGAAAGCTGGAGATGCTTCAGCTGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAGCATCAGACAGGACCTCACAAGATTGAAATCTCCAGCTGAAAGTTCCACTAAACCTCACCCGGAAGCCCCTAGTCATTCTGTTCCTCATGGTGGTATAGAAATTGAGATCAATGCCTTCGAATCAACTCCAAATGTGCAGAGTGATAAAGCAGCTGATGTTGGAGCAAGCGACAAGGATTCACCAATGGATTGCGATCCAGATGCTAGGACAGAGGCTGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAAGATCTTAGCCCGTCCTAGTTGTAAACTGAAATTGAGCAAAAGTAACTATAAACAGGTATTGGAAGAATTAAATGGGACGCTGGATACACAGGCTGCATCGACTTCGACTACATCTGTGCGCTGTGCAGTATTTAGAGAGGATGTCCGTGCTGCAATACTGGATGGAAATGAAATAGATGTGTCTTTTGATAACTTCCCATATTATTTGAGTGAGAATACAAAAAATGTCCTGGTGGCAGCTTGCTTTATACACCTCAAGCATAAAGATAAAGAACATGAGAAGTACACTACGGATCTTACAACTATAAACCCTCGTATTCTGCTCTCGGGACCGGCAGGGTCAGAAATCTATCAGGAGATTTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTCGATAGCCATTCACTTTTGGGTGGTTTATCCTCCAAGCAAGCTGAGCTACTCAGAGATGGATTTATTGTCGAAAAAGCCTGCAGAGCCACCAAAGAAAATCCTACAGCCACAGATATGGCTAGGAACATGGATCCATTAGCTAGTGAAACAGATATGCCTAGCTCTTCAGACGTACCTACATCATCATCTGGCCCTGAGTCTCAACTTAAGTTGGAAATTGATAACATACCATCTACCCCTGGGACAGCCAAAAATTGCTTGTTTAAATTAGGTGATAAAGTGAAATTTAGCTGTTCATCTTCGTGTGGCTTGTACCAGCCATCTTCAAGGGGCCCACCTAATGGAAGTCGGGGAAAGGTTGTCTTAATATTTGATGATAACCCGTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATATCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCAATGATCTTCGTTTGGAAAACAGTGGTGTGGAGGAACTGGACAAATTGCTTATCAATTCGTTGTTTGAGGTTGTTTACAGTGAGAGCAGAAATGCACCATTCATTTTATTCATGAAGGATGCCGAGAAGTCTGTAGTAGGAAATGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAACCTTCCAGACAATGTGGTGGTAATAGGTTCACACACTCACACCGACAGTAGAAAGGAGAAGTCGCATCCCGGGGGTTTGCTTTTTACAAAATTCGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATGGTTTTGGACGATTGCATGACAGAGGAAAGGAAGTCCCAAAGCCAAACAAAATGTTGATTAAGCTTTTCCCTAATAAAGTTACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAATTGGATCGAGATGTCGAGACTCTTAAAATCAAAGGAAATTTGCATCACTTGCGCACAGTTTTAGGCCGTTGCGGAATGGAATGCGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAACGAAAATGCAGAGAAGATAGTCGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCTGCAGCTGATCCTGATTCGAAGCTGGTCTTGTCTTGTGACAGCATCCAGTACGGAATTGAGATCTTGCATTCTATCCAGAATGAGCCCAAGAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAACGAGTTTGAAAAGAAGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTCGAGAATGTCAAGGATACACTGAAAGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTGTTTTGCAAGGGACAATTAACCAAGCCGTGCAAGGGGATCCTATTATTTGGCCCCCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATCACGTCTAAGTGGTTTGGCGAGGGCGAAAAATATGTGAAAGCTGTTTTCTCTCTGGCTAGTAAAATTGCTCCTAGTGTTATATTTGTCGATGAAGTTGACAGTATGTTGGGACGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTGCGTACAAAGGATACTGAGCGGGTTCTTGTGCTTGCAGCAACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATAAGGAGGCTGCCACGGAGATTGATGGTAAATTTGCCAGATGCTCCTAACAGAGCAAAAATTTTGAAAGTTATACTGGCAAAAGAGGAATTATCCCCAGATATTGATTTGGATGCAGTTGCAAGCATGACTGATGGATATTCGGGAAGTGATCTAAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAATGTGCTGCTGCTCTAGCAGAAGGTCGACCTGCTCCATCATTATGTAGCAGTGTGGACATCCGATCTTTAAACATGGATGACTTCAAATATGCACATCAACAGGTCTGTGCAAGTGTTTCCTCCGAATCAGTAAATATGACCGAACTATTACAATGGAATGAACTCTATGGCGAAGGTGGTTCAAGAGTAAAGAAATCTCTCAGCTATTTCATGTGA 3711 0.4395 MVSTRRSGSLSGNNSKRSSSSEDKTPSPKRQKVDNDGSSEKPMPAAENSKELRIPEPAPDPGERGSGDVQIAGDGAIDAVSSGKADATATAAVVAPIADGSSPIDKAKGAFSSWSAHQKPSPKLESSAPWGRLLSQSAQHPNVIISPQNFTIGSSRNCSLPLKDQTISGNLCKIKHSQGKGSNVAVLESTGSKGSVLVNGTLVKKNTNCVLNSGDEVVFGLLGKHSYIFQQLNTEVAVKGAEVQSSVGKFQQIERKAGDASAVAGASILASLSSIRQDLTRLKSPAESSTKPHPEAPSHSVPHGGIEIEINAFESTPNVQSDKAADVGASDKDSPMDCDPDARTEAGNVKLSGVNDFLRPFFKILARPSCKLKLSKSNYKQVLEELNGTLDTQAASTSTTSVRCAVFREDVRAAILDGNEIDVSFDNFPYYLSENTKNVLVAACFIHLKHKDKEHEKYTTDLTTINPRILLSGPAGSEIYQEILAKALAKYFGAKLLIFDSHSLLGGLSSKQAELLRDGFIVEKACRATKENPTATDMARNMDPLASETDMPSSSDVPTSSSGPESQLKLEIDNIPSTPGTAKNCLFKLGDKVKFSCSSSCGLYQPSSRGPPNGSRGKVVLIFDDNPLSKIGVRFDKPISDGVDLGGACEGGQGFFCNVNDLRLENSGVEELDKLLINSLFEVVYSESRNAPFILFMKDAEKSVVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDGFGRLHDRGKEVPKPNKMLIKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIVGWALSHHLMQNSAADPDSKLVLSCDSIQYGIEILHSIQNEPKSLKKSLKDIVTENEFEKKLLGDVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEELSPDIDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKECAAALAEGRPAPSLCSSVDIRSLNMDDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKSLSYFM* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0777 1236 Pfam FHA domain 151 220 IPR000253 GO:0005515
Lan12g0777 1236 Gene3D - 930 1211 IPR027417 -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 532 567 - -
Lan12g0777 1236 SUPERFAMILY SMAD/FHA domain 119 230 IPR008984 GO:0005515
Lan12g0777 1236 MobiDBLite consensus disorder prediction 281 303 - -
Lan12g0777 1236 SMART AAA_5 968 1105 IPR003593 -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 319 345 - -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 326 344 - -
Lan12g0777 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1210 IPR027417 -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 108 128 - -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 1 71 - -
Lan12g0777 1236 ProSitePatterns AAA-protein family signature. 1075 1094 IPR003960 GO:0005524|GO:0016887
Lan12g0777 1236 MobiDBLite consensus disorder prediction 22 37 - -
Lan12g0777 1236 CDD FHA 132 230 IPR000253 GO:0005515
Lan12g0777 1236 Pfam ATPase family associated with various cellular activities (AAA) 972 1101 IPR003959 GO:0005524|GO:0016887
Lan12g0777 1236 Gene3D - 129 238 - -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 547 567 - -
Lan12g0777 1236 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 389 1236 - -
Lan12g0777 1236 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 78 356 - -
Lan12g0777 1236 MobiDBLite consensus disorder prediction 281 295 - -
Lan12g0777 1236 CDD AAA 970 1103 - -
Lan12g0777 1236 Gene3D - 1104 1198 - -
Lan12g0777 1236 Pfam AAA+ lid domain 1125 1160 IPR041569 -
Lan12g0777 1236 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 389 1236 - -
Lan12g0777 1236 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 78 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0777 Lan-Chr12 15011886 15021957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0777 931 1175 Calmodulin-binding Proteins AT3G56690 40.476 1.40e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0777 - - aprc:113849024 1981.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0777 12 15011886 15021957 Lan1g1931 1 34566803 34578418 LSH
Lan12g0777 12 15011886 15021957 Lan15g0443 15 10239508 10256627 PCT
Lan12g0777 12 15011886 15021957 Lan14g0349 14 7239387 7243651 PCT
Lan15g0443 15 10239508 10256627 Lan12g0777 12 15011886 15021957 PCT
Lan14g0349 14 7239387 7243651 Lan12g0777 12 15011886 15021957 PCT