Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0765 ATGGACTGGAATTTGAAATCACCTTCTTTGGATTTGACTGAAGTGGATCAGGGATCAACTTTTCCCAGCATGGAAACAATGGATGAAGGGTCAAGCAGGTTTGGAGTTTACAGAGCAAAAGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCAAGTTGGGAATTTTGGCGCAGAATCAATGTTGTCCAAGCCCAAATATGCTGCTTCTGATGCTGGACTTTCCAAAATGGCATCAACCTTAGCTTCAGGGTCATCTAAGAGAGCTAGAGCTTTCAACAATGGGAATCACACAGTGACATGCCTTGTGGATGGGTGCAATTCAGATCTTAGTAATTGCAGGGACTATCATAGGCGCCATAAGGTGTGTGAACTTCATTCCAAGACTCCACAGGTCACTATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACAGAAGGAGAAGAAAGCCCCAACCAGAACCACTCACTCGTTCCACTAGTTTTTTGTCCAATTACCAAGGAACCCAGTTGCTACCTTTCTCAGGTTCACAAATATACTCTTCTAATACTATGATGAATCCTGGTTGGAGTGGAGGAGTTGTTACTTCATCTGCAGATGTTAGACTCCACAGCCACCACCAACAACAAATGAATTTCATTGAGAAACAAGACCTTTTTCTTGGATCTTCTCCAACCAGCTACAAAGAAGGGAAGCAACTGGCATACCTACAAGGTGATCACAACCCTACTGTCACACTCAACAACCAAAATACACATCATCTTCAGACACTTCTCAGGACTAGCCCTTACTCAGAAAGTAGTGGAGGGTTGAGATGCAAAATGTTCTGTGATGATAGCCTAACAAGTTCTGTTCATGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACACACAACAATTCTGGAAATGGATTGAACCAAATGGTGCAGCCTCACTCATCATCACTTATGCAACCCTTAGGCCTGAGTCTGCATGATAATAATAGCTTGGAGTCTGTGGACCCAGTTTTGGATCCTAATGGGAGTGACCATTGTTCATCAATGTATAACATTGGCTCTAATGGATCCCAGGGGAGTGATGTTCCTCAACTATTTCCCTTTCAATGGGAATAG 1191 0.4374 MDWNLKSPSLDLTEVDQGSTFPSMETMDEGSSRFGVYRAKGEFSVDLKLGQVGNFGAESMLSKPKYAASDAGLSKMASTLASGSSKRARAFNNGNHTVTCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSTSFLSNYQGTQLLPFSGSQIYSSNTMMNPGWSGGVVTSSADVRLHSHHQQQMNFIEKQDLFLGSSPTSYKEGKQLAYLQGDHNPTVTLNNQNTHHLQTLLRTSPYSESSGGLRCKMFCDDSLTSSVHDSPCALSLLSSPQTHNNSGNGLNQMVQPHSSSLMQPLGLSLHDNNSLESVDPVLDPNGSDHCSSMYNIGSNGSQGSDVPQLFPFQWE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0765 396 MobiDBLite consensus disorder prediction 163 183 - -
Lan12g0765 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 396 IPR044817 GO:0003677
Lan12g0765 396 SUPERFAMILY SBT domain 98 179 IPR036893 GO:0003677|GO:0005634
Lan12g0765 396 ProSiteProfiles Zinc finger SBP-type profile. 97 174 IPR004333 GO:0003677
Lan12g0765 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 7 396 - -
Lan12g0765 396 Gene3D - 91 161 IPR036893 GO:0003677|GO:0005634
Lan12g0765 396 Pfam SBP domain 100 173 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0765 Lan-Chr12 14920636 14924386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0765 1 396 SBP-box Gene Family AT5G50670 41.481 3.11e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan12g0765 SBP 5.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0765 - - gmx:100805328 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0765 12 14920636 14924386 Lan1g1923 1 34490200 34493546 LSH
Lan12g0765 12 14920636 14924386 Lan1g1475 1 24752881 24758979 LSH