Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0741 ATGTGGATGAGAGATCTGAGAGAGAAAGAAGAACAAATGACGTCATATTCAAAGATAGCAATGAATAAAAGAGGACAATTCATCAACAACAACACTCGTGATAGAGGGGAAGGTCAAAATGAAGCAGAGCAAGCACTTTTCAGAGAGCTATGGGAAGCGTGTGCAGGTCCCCTTGTAACTGCGCCAAGAGAAGGAGAGCTCGTATTCTACTTCCCACAGGGCCATATTGAACAGGTTGAGGCCTCAACAAATCAGGTACCGAATGAGAACATGCCTGTGTATGATCTACGCTCCAAGATTCTATGTCGGGTCATGAACGTTGTGCTTAAGGTAGAGCCATACACTGATGAGGTGTTTGCTCAGGTTACCTTAGTCCCAGAGCCAATTCAAGATGAGAATAAAGTTGAGAAAGAGCCTCCATTAGCACCCCTGCCAAGGATTCATGTGCGTTCGTTCTATAAAACCTTGACTGCCTCTGATACCAGTACTCATGGAGGGCTTTCGGTGTTGAAGCGACATGCTGATGAATGCCTTCCTCCATTGGACATGACAAAGGATGTACCTACTCAGGAATTGGTGACCAAGGACTTGCATGGGAACGAGTGGCGATTCAAGCATATCTATCGTGGTGAACCGCGTAGGCACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCACCTCAAAGAGGTTGGTTGCTGGGGACGCATTTATATTTTTAAGATGTGAGAATGGGGAACTTAGAGTTGGAGTCAGGCGTGCAATGAGGCAACAGGTTAATGTTCCATTGTCGATTATCTCTAGCCACAGCATGTACCTCGGTGTCCTTGCAACTGCTTGGCATGCTGCCTCCACTAGGACAATGTTCACTGTTTATTACAAGCCTAGGACTAGTCCAGTTGGGTTTATTGTTCCATATTATCAATACATGGAGTCTCTCAAAATTAATTATACTAATGGAATACGATTCAAAATGAGGTTTGAAGGTGAAGAGGCTCGAGAGCAAAGGTTTACTGGGACCATTGTTGGAATTGAAGATGTTGACCCCAAAAAGTGGCCTGACTCTAAATGGAGAAATCTCAAGGTGAGATGGGATGAAACATCTAACATACCTCTTCCTGATAGAGTTTCCCCTTGGATGATAGAGCCTTATCTTGCTCCTCCATCTCTAAATCTTATTTCAATACCTAGACCTAAAAGACATCGACCTAATGTGGTTCCATCATCCCCAGAGTCATCTGTTCTTACTCGAGAAGGAACATCATCTAAAGTAACTACAAACCCTTTTCCAGCCAGTGGATATTCAAGGGTGTTGCAAGGTTCAGAATTCTCTACCTTAAGAGGCAATTGGGTAGGGAGCAATACATCTGATAATGGTGGAAAGTCTATTATGTGGCCACCTGCAGTATATGACAAAAAAAATGATGTTGTTTCCACTTCAAGAAGGTTTGGACCAGAAAGTTGGATGTCAACGAGGAGACATGAAACATATTCAGATCTTCTATCAGGCTTTGGGGCCAATAGAGATCTTTCTTCACATATACCCTCCCTGCTTGATCAAAGTGGTGATGTAGCTAATGCTGCTAAGAAACATTTGTTGGATCGTGAAGGCGAACATAATGTGATGGGTAGTCCATGTTCTGTAGTGCCCTCTAGTTTATCACTGGACCTTGTGAACTCCAATACAAAAGGTCTTGCACATGGTGGTGATTTACCTTATCAAGTTCGAGGGAATTTTAGGTATAGTGCATTCAGTGAATACCCTGTGTATGGTGGTCAGAAAGTTGAGCATCCACATGGTAACCTAATGATGCTACCACCACCCACAACTCAATATGTGAGTCCTCACTCAAGAGAAATGTCGTCGAAACAAATATCAGCCAATACTGGTGAAGTTGTGAAACCAAAAGAAGGCAACTGTAAGCTATTTGGCTTCTCACTTCCTAGTAGCCCCATAGTATCAGGTCCTTCCATGTCGCAAAGAAATGTTGTAAATGAGCTAGTTGGTCCCATGCATCTTCCATCACACCAAAATCATACTTCCGAAAATGATCAGAAATCTGAACATTCAAGGGGTTCTAAACCTACAGATGGTGAATTTGTTGCTGATGACTATGAGAAACAATCGAAAGATGTTCAACCCAAGCTGCACAATAGTTTTGCTAGAAGCTACACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGGTCTGTGGACCTTACAAAGTTCGGTGGCTATGATGAATTAATTGCTGAATTGGACCAACTTTTTGAATTTGGAGGTGAATTAACTTCTCCAAAAAAGGACTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGCGATGATCCATGGCTGGAGTTTTGTGCAATGGTCTGCAAAATGTATATCTACCCAAAAGAGGAGATTCAGAAAATGAACCCTGGTGCCCTAGGTTCAAAAAATAAAGAGAACCATTCAGGTAGAAGTTGA 2481 0.4264 MWMRDLREKEEQMTSYSKIAMNKRGQFINNNTRDRGEGQNEAEQALFRELWEACAGPLVTAPREGELVFYFPQGHIEQVEASTNQVPNENMPVYDLRSKILCRVMNVVLKVEPYTDEVFAQVTLVPEPIQDENKVEKEPPLAPLPRIHVRSFYKTLTASDTSTHGGLSVLKRHADECLPPLDMTKDVPTQELVTKDLHGNEWRFKHIYRGEPRRHLLQSGWSVFVTSKRLVAGDAFIFLRCENGELRVGVRRAMRQQVNVPLSIISSHSMYLGVLATAWHAASTRTMFTVYYKPRTSPVGFIVPYYQYMESLKINYTNGIRFKMRFEGEEAREQRFTGTIVGIEDVDPKKWPDSKWRNLKVRWDETSNIPLPDRVSPWMIEPYLAPPSLNLISIPRPKRHRPNVVPSSPESSVLTREGTSSKVTTNPFPASGYSRVLQGSEFSTLRGNWVGSNTSDNGGKSIMWPPAVYDKKNDVVSTSRRFGPESWMSTRRHETYSDLLSGFGANRDLSSHIPSLLDQSGDVANAAKKHLLDREGEHNVMGSPCSVVPSSLSLDLVNSNTKGLAHGGDLPYQVRGNFRYSAFSEYPVYGGQKVEHPHGNLMMLPPPTTQYVSPHSREMSSKQISANTGEVVKPKEGNCKLFGFSLPSSPIVSGPSMSQRNVVNELVGPMHLPSHQNHTSENDQKSEHSRGSKPTDGEFVADDYEKQSKDVQPKLHNSFARSYTKVHKKGIALGRSVDLTKFGGYDELIAELDQLFEFGGELTSPKKDWLIVYTDNEGDMMLVGDDPWLEFCAMVCKMYIYPKEEIQKMNPGALGSKNKENHSGRS* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0741 826 SMART B3_2 152 254 IPR003340 GO:0003677
Lan12g0741 826 Pfam AUX/IAA family 704 803 IPR033389 -
Lan12g0741 826 PANTHER AUXIN RESPONSE FACTOR 2 32 823 - -
Lan12g0741 826 MobiDBLite consensus disorder prediction 400 427 - -
Lan12g0741 826 Gene3D - 316 385 - -
Lan12g0741 826 Gene3D - 149 254 IPR015300 -
Lan12g0741 826 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677
Lan12g0741 826 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Lan12g0741 826 Pfam Auxin response factor 278 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan12g0741 826 SUPERFAMILY DNA-binding pseudobarrel domain 150 281 IPR015300 -
Lan12g0741 826 CDD B3_DNA 150 252 IPR003340 GO:0003677
Lan12g0741 826 Gene3D - 717 810 - -
Lan12g0741 826 ProSiteProfiles PB1 domain profile. 721 803 IPR000270 GO:0005515
Lan12g0741 826 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 823 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan12g0741 826 MobiDBLite consensus disorder prediction 670 699 - -
Lan12g0741 826 SUPERFAMILY CAD & PB1 domains 723 798 - -
Lan12g0741 826 MobiDBLite consensus disorder prediction 405 427 - -
Lan12g0741 826 MobiDBLite consensus disorder prediction 678 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0741 Lan-Chr12 14652434 14658639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0741 19 820 B3 DNA Binding Superfamily AT5G62000 58.881 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan12g0741 B3 1.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0741 - - gmx:100815956 1118.99