Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0740 ATGTGGATGAGAGATCTGAGAGAGAAAGAAGAACAAATGACGTCATATTCAAAGATAGCAATGAATAAAAGAGGACAATTCATCAACAACAACACTCGTGATAGAGGGGAAGGTCAAAATGAAGCAGAGCAAGCACTTTTCAGAGAGCTATGGGAAGCGTGTGCAGGTCCCCTTGTAACTGCGCCAAGAGAAGGAGAGCTCGTATTCTACTTCCCACAGGGCCATATTGAACAGGTTGAGGCCTCAACAAATCAGGTACCGAATGAGAACATGCCTGTGTATGATCTACGCTCCAAGATTCTATGTCGGGTCATGAACGTTGTGCTTAAGGTAGAGCCATACACTGATGAGGTGTTTGCTCAGGTTACCTTAGTCCCAGAGCCAATTCAAGATGAGAATAAAGTTGAGAAAGAGCCTCCATTAGCACCCCTGCCAAGGATTCATGTGCGTTCGTTCTATAAAACCTTGACTGCCTCTGATACCAGTACTCATGGAGGGCTTTCGGTGTTGAAGCGACATGCTGATGAATGCCTTCCTCCATTGGACATGACAAAGGATGTACCTACTCAGGAATTGGTGACCAAGGACTTGCATGGGAACGAGTGGCGATTCAAGCATATCTATCGTGGTGAACCGCGTAGGCACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCACCTCAAAGAGGTTGGTTGCTGGGGACGCATTTATATTTTTAAGATGTGAGAATGGGGAACTTAGAGTTGGAGTCAGGCGTGCAATGAGGCAACAGGTTAATGTTCCATTGTCGATTATCTCTAGCCACAGCATGTACCTCGGTGTCCTTGCAACTGCTTGGCATGCTGCCTCCACTAGGACAATGTTCACTGTTTATTACAAGCCTAGGACTAGTCCAGTTGGGTTTATTGTTCCATATTATCAATACATGGAGTCTCTCAAAATTAATTATACTAATGGAATACGATTCAAAATGAGGTTTGAAGGTGAAGAGGCTCGAGAGCAAAGGTTTACTGGGACCATTGTTGGAATTGAAGATGTTGACCCCAAAAAGTGGCCTGACTCTAAATGGAGAAATCTCAAGGTTGTACTTTAG 1092 0.4441 MWMRDLREKEEQMTSYSKIAMNKRGQFINNNTRDRGEGQNEAEQALFRELWEACAGPLVTAPREGELVFYFPQGHIEQVEASTNQVPNENMPVYDLRSKILCRVMNVVLKVEPYTDEVFAQVTLVPEPIQDENKVEKEPPLAPLPRIHVRSFYKTLTASDTSTHGGLSVLKRHADECLPPLDMTKDVPTQELVTKDLHGNEWRFKHIYRGEPRRHLLQSGWSVFVTSKRLVAGDAFIFLRCENGELRVGVRRAMRQQVNVPLSIISSHSMYLGVLATAWHAASTRTMFTVYYKPRTSPVGFIVPYYQYMESLKINYTNGIRFKMRFEGEEAREQRFTGTIVGIEDVDPKKWPDSKWRNLKVVL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0740 363 SMART B3_2 152 254 IPR003340 GO:0003677
Lan12g0740 363 Pfam Auxin response factor 278 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan12g0740 363 Gene3D - 316 363 - -
Lan12g0740 363 PANTHER AUXIN RESPONSE FACTOR 2 32 361 - -
Lan12g0740 363 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 361 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan12g0740 363 SUPERFAMILY DNA-binding pseudobarrel domain 150 281 IPR015300 -
Lan12g0740 363 Gene3D - 149 254 IPR015300 -
Lan12g0740 363 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Lan12g0740 363 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677
Lan12g0740 363 CDD B3_DNA 150 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0740 Lan-Chr12 14640727 14643938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0740 19 361 B3 DNA Binding Superfamily AT5G62000 73.761 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan12g0740 B3 4.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0740 - - lang:109326450 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0740 12 14640727 14643938 Lan1g1499 1 25271330 25276148 LSH
Lan12g0740 12 14640727 14643938 Lan15g0467 15 10904201 10908801 PCT