Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0737 ATGCCTTTTCAAGTAATGGATCAGAGGGGTGTTTCTGCTCCATCCCTCTTCTTTGATGACATTTCCTTTCATTCTGAGAGGAATGTTGGATTACAGAAGCAAAAATCCTTTCATGATCGATACCCACAAGGAAAGAACGGAAGGGTGGCTTCACCTGGCAGCATTTTTAGTGATTCATCACCCCTTGGTAGAAATGCAAAATCTGGTTTACAATTGTCACAGACTAGTCTACCCAGAGAAAGTATGGAAAATCTACATTTGGGTGGAGAAGAAGGCATTGTTGATGTGTTGAAAGATTCCAAGGAATCATCATATTATCATCCCAGATCATGGTCTGATCCATATATGCAGCCAGCACGTACCTCATATGGTTTAATTGGGAGCAAGATTGTCACCAACGCGGTCCCTTGTGAAAGTAGTCTATTCTCAAGCTCTTTGTCTGAGATATTTAGCCAAAAGTTGAGGTTAATGGGGAAGGATGTTCTGTCTGATCAGCGCATTACTGTTGGTTCCCTTCCCAAGGAAGAACCTTATAAATCTATTGAAGAAGACATTATAGGGAATATCCTTCCTGATGAAGATGATTTGTTTTCTGGTGTCACTAATGAGTTAGGATACAACACTCATGCCAGAACAAATGATGACTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGGGGCATGGAGCTGGAAGGAGGTGAACATCTAAATTCAGGAAAGAGAACAAATGGTCAGGATGGAAATTCTGTTTTCTATGGAGGTTCTAAAGGAAAACTTCCTCTTGGTGAACAACCTTCTCGAACACTTTTTGTGCGAAATATTAATAGTAATGTAGAAGACTCTGAGCTAAAGTCTGTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGCGGTTTTGTTATGATTTCTTATTATGACCTAAGAGCAGCACAAAATGCAATGCAAGCACTTCAAAACAGGCCATTGAGGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGCCAATGCTCCAGAGAAGGATATTGGCCACGGTACACTGATGCTATCTGGTCTTGATTCATCTGCTTTAAATGACGAGCTTAAGCGGATTTTTGGCTTTTATGGAGAAATTAAAGACATATACGAGTATCCAGAAATGAATCATCACACATTTATAGAGTTTTATGATGTGCGAGCCGCAGAAGCTGCTCTTCGTGCACTGAACAGGATTGGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGTCATCCTAGTCTGATGCAGCAGTCTCATAAGGGGCAAGAAGAACCAGGTCTTGGTCAAAGTATTATTGACAACTTATCATTAACACAGAAGGCAAAAGTATCTTATGGAGCACTTGGATCTGGCTGCTTGGGAAATGGATATAACCAGGGATTTCAATCTGCAATGCGGCAACCTTTGAATGCATTTGTTGATAATGCTTTCTTTCAAGCGAACTCTAGCATTCACCACACAGTGGGAGGGGCATCTGCTGCAAAAGTGTCTGGCGTTCGTGAGTCCAGTAACATTGCTGATGCAATGAAATTTGCATCTAGTCCGAGATTTCATCCTCATTCTTTACCTGAGTATCTTGGTAGTTTACCTAATGGTAGTCGTTATAACTTTTCAAGCACCGTTAGCAACATGGCTAGCAATATTGGTACTGCAACAACAGAAGCCTCTGACGGCAGGCACATCCAGGGAATGGTCTCAAATAGGAAGGTAGCAGAGTTTAATGCAGGAGGAAATGGAATCCCCCCAAATAATGGGCTTTATGATATGTGGAACAACTCCAGCTTGCATCAGCAACCTTCATCAGGTTCTGTGCTCTGGCAGAAAACACCATCATTTGTTAATGGTGCTTCTGCTCCAGGCCTTCCTCAGATGCCAGGCTTTGCCAAAGCATCGCCTCAGATGCTGAGAACACAACATATAGACCATCACGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCAACATTCTTTCTTGGGAGAGTCCCCTGAAGCTTCTGGTTTTCGCTTGGGTTCTTTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATTCACCAGATTTATCTTCTCACATGTTTTCTCATGTTGGTGGGAAAAATACCGAACTGGTGTCAAATGCTGCACATAGCTCTCCTAAGCAATTGTCACATGTTTTCCCAGGGAGTCATCCTACTTCATTGTCAAAATTTGATTCTACCAATGAACGGATGAGAAATATTTATCATCATAAAAGTGAAGCAAACACTAACAATGCTGATAAAAAACAATATGAACTCGACCTAGGTAGCATATTGCGTGGGAAAGACAGCCGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCACTGTCGGGGAACTTACGATTTTCTGTATCTACCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAATATGATCGATCCTGCTCAAATTTTTGCAACACTGCAGGCTTTTAATGGGAAAAAGTGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTACATATGCTCGAATTCAAGGAAAAACTTCTCTTATTGCTCATTTCCAGAACTCAAGCTTGATGAATGAAGATAAACGCTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATATGGAGCCTTTCCCTGTAGGTGCCAATATTAGAGTGAGACCTAGAAAATCGCGCACCGGCAGTAATGAGGATAACCGCAGCCAAGGAAGTTCTTCAACTTTAGCAAGTGGAGAAGAGTCTGCTAATGGAATAGACTCTTCAATCAGCTCTTAA 2880 0.416 MPFQVMDQRGVSAPSLFFDDISFHSERNVGLQKQKSFHDRYPQGKNGRVASPGSIFSDSSPLGRNAKSGLQLSQTSLPRESMENLHLGGEEGIVDVLKDSKESSYYHPRSWSDPYMQPARTSYGLIGSKIVTNAVPCESSLFSSSLSEIFSQKLRLMGKDVLSDQRITVGSLPKEEPYKSIEEDIIGNILPDEDDLFSGVTNELGYNTHARTNDDFEDFDLFSSGGGMELEGGEHLNSGKRTNGQDGNSVFYGGSKGKLPLGEQPSRTLFVRNINSNVEDSELKSVFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRPLRSRKLDIHYSIPKANAPEKDIGHGTLMLSGLDSSALNDELKRIFGFYGEIKDIYEYPEMNHHTFIEFYDVRAAEAALRALNRIGIAGKQIKLEPGHPSLMQQSHKGQEEPGLGQSIIDNLSLTQKAKVSYGALGSGCLGNGYNQGFQSAMRQPLNAFVDNAFFQANSSIHHTVGGASAAKVSGVRESSNIADAMKFASSPRFHPHSLPEYLGSLPNGSRYNFSSTVSNMASNIGTATTEASDGRHIQGMVSNRKVAEFNAGGNGIPPNNGLYDMWNNSSLHQQPSSGSVLWQKTPSFVNGASAPGLPQMPGFAKASPQMLRTQHIDHHVGSAPVVTASPWERQHSFLGESPEASGFRLGSLGSGGFHGSWQLHSPDLSSHMFSHVGGKNTELVSNAAHSSPKQLSHVFPGSHPTSLSKFDSTNERMRNIYHHKSEANTNNADKKQYELDLGSILRGKDSRTTLMIKNIPNKYTSKMLLVAIDEHCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIFATLQAFNGKKWEKFNSEKVASLTYARIQGKTSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDMEPFPVGANIRVRPRKSRTGSNEDNRSQGSSSTLASGEESANGIDSSISS* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0737 959 SUPERFAMILY RNA-binding domain, RBD 790 874 IPR035979 GO:0003676
Lan12g0737 959 CDD RRM3_MEI2_like 791 876 IPR034454 -
Lan12g0737 959 MobiDBLite consensus disorder prediction 33 69 - -
Lan12g0737 959 Gene3D - 351 439 IPR012677 -
Lan12g0737 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Lan12g0737 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Lan12g0737 959 MobiDBLite consensus disorder prediction 932 959 - -
Lan12g0737 959 Gene3D - 260 350 IPR012677 -
Lan12g0737 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Lan12g0737 959 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 954 - -
Lan12g0737 959 MobiDBLite consensus disorder prediction 906 959 - -
Lan12g0737 959 CDD RRM1_MEI2_like 266 341 IPR034453 -
Lan12g0737 959 Pfam RNA recognition motif 2 788 884 IPR007201 -
Lan12g0737 959 Gene3D - 740 861 IPR012677 -
Lan12g0737 959 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 954 - -
Lan12g0737 959 SMART rrm1_1 353 421 IPR000504 GO:0003723
Lan12g0737 959 SMART rrm1_1 268 336 IPR000504 GO:0003723
Lan12g0737 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Lan12g0737 959 MobiDBLite consensus disorder prediction 50 69 - -
Lan12g0737 959 SUPERFAMILY RNA-binding domain, RBD 264 423 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0737 Lan-Chr12 14588054 14596435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0737 262 418 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 7.99e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0737 - - gmx:100797893 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0737 12 14588054 14596435 Lan15g0470 15 11022898 11031430 PCT
Lan12g0737 12 14588054 14596435 Lan14g0379 14 8249290 8257900 PCT
Lan15g0470 15 11022898 11031430 Lan12g0737 12 14588054 14596435 PCT
Lan14g0379 14 8249290 8257900 Lan12g0737 12 14588054 14596435 PCT