Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0715 ATGGCTTCTCCTCCATTACCAGTAGCATATCAAGCATGGACGAGTCAAGCAGTACCAGATTGGTTAAACAAAGGAGACAACGCATGGCAAATGGTTGCAGCAACCTTAGTAGGAATTCAAAGCATGCCAGGTCTTGTTATTCTCTATGGCAGCATAGTCAAGAAAAAATGGGCTGTTAATTCTGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTATCATTTGTTGGGTTACATGGGGTTATAAAATGAGCTTTGGTGAGAAACTCTTACCCTTTTGGGGAAAAGCTGGACCTGCTTTGGGACAAAGTTTTCTGATCAAACAAGCAGCGTTACCAGCCACACCACATTACTATAAGAATGGAGTGTTGGAAACTGCTGAGATTGAACCTTATTATCCTATGGCTACTATGGTTTGGTTTCAGGGTGTGTTTGCTGCTATTGCTCTTGTTATTTTGGCTGGATCTGTGCTAGCTAGGATGAGTTTTAAGGCGTGGATGTTGTTTGTGCCTCTTTGGCTCACTTTTTCTTATACGGTTGGTGCTTTTAGCTTGTGGGGTGGTGGGTTTTTGTTTCAATGGGGTGTTATGGATTACTCTGGTGGTTATGTCATTCATCTTTCTTCTGGCTTTGCTGGTTTCACTGCTGCTTATTGGGTGGGGCCAAGATTAAAAAAAGACAGAGAAAGATTCCCACCAAACAATGTGTTGCTAACTTTGGCCGGAGCAGGGTTATTATGGATGGGATGGGCAGGCTTCAATGGAGGAGATCCTTACTCCGTCAATACTGACTCCTCCATGGCGGTGCTTAACACCAACATTTGCGCCGCCACCAGCCTCCTTGTGTGGACATGGCTTGATGTCATCTTCTTCAAAAAACCTTCCGTTATTGGAGCCGTTCAGGGCATGATCACCGGCCTTGTTTGCATCACTCCGGCTGCCGGTCTTGTTCAAGGATGGGCTGCAATAGTAATGGGAATTCTATCAGGAAGTGTGCCATGGTTCACCATGATGATATTAGGGAAGAAGTTCATATTGTTCCAAATTGTTGATGACACCTTAGCTGTGTTCCACACTCATGCTGTGGCTGGACTTCTAGGAGGCATACTCACTGGTATATTCGCGGAGCCTCGTCTAAGTGCACTCTTTCTACCAGTCACCAATTCAAGAGGAGCAATATATGGAGGCTCTGGTGGAGTACAAATCCTTAAACAAATTGTGGGTGCTTTATTCATAGCTGGGTGGAACATTTTAGCCACTTCAATTATTTGTTTTGTTATAAGTTTGATTGTTCCACTGAGAATGACAGAGGATGAGCTTTCGATTGGTGATGATGCTGTGCATGGGGAAGAAGCTTATGCTTTGTGGGGAGATGGAGAGAAACTTAGTCTCTATAAAGATGAGGCAACAAACCATGGTGGTGTTATTATGTCAAGTGGTGCCACCCAAGTGGTATAG 1455 0.4433 MASPPLPVAYQAWTSQAVPDWLNKGDNAWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWGYKMSFGEKLLPFWGKAGPALGQSFLIKQAALPATPHYYKNGVLETAEIEPYYPMATMVWFQGVFAAIALVILAGSVLARMSFKAWMLFVPLWLTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGFAGFTAAYWVGPRLKKDRERFPPNNVLLTLAGAGLLWMGWAGFNGGDPYSVNTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGILSGSVPWFTMMILGKKFILFQIVDDTLAVFHTHAVAGLLGGILTGIFAEPRLSALFLPVTNSRGAIYGGSGGVQILKQIVGALFIAGWNILATSIICFVISLIVPLRMTEDELSIGDDAVHGEEAYALWGDGEKLSLYKDEATNHGGVIMSSGATQVV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0715 484 Pfam Ammonium Transporter Family 28 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lan12g0715 484 TIGRFAM amt: ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lan12g0715 484 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lan12g0715 484 Gene3D Ammonium transporter AmtB like domains 7 455 IPR029020 -
Lan12g0715 484 PRINTS Rhesus blood group protein signature 141 157 IPR002229 GO:0005887
Lan12g0715 484 PRINTS Rhesus blood group protein signature 236 254 IPR002229 GO:0005887
Lan12g0715 484 PRINTS Rhesus blood group protein signature 267 289 IPR002229 GO:0005887
Lan12g0715 484 PRINTS Rhesus blood group protein signature 322 340 IPR002229 GO:0005887
Lan12g0715 484 PRINTS Rhesus blood group protein signature 360 376 IPR002229 GO:0005887
Lan12g0715 484 PANTHER AMMONIUM TRANSPORTER MEP2 16 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lan12g0715 484 PANTHER AMMONIUM TRANSPORTER 16 465 - -
Lan12g0715 484 SUPERFAMILY Ammonium transporter 21 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0715 Lan-Chr12 13950390 13954540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0715 134 471 Inorganic Solute Cotransporters AT2G38290 70.710 2.03e-166 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0715 K03320 - gmx:100785993 875.159