Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0709 ATGAAGGAAATGGATCCAATGGCCGAAGAAAATGTGTCAGCAACGGCAAAGGAAGAAGTTATAGACGATGGTTCCTCAAATGTTGAAGCTGGGGATTTAGAATCTTGCTCTCGACTTAGTCTTGAGAAGGACTCGGGCTTGCCATGTTGTCGCGTCTGCCAATGTACTGAGTCTGATAAAAGGGGAGATGCAGCATTAGAATTTTTGGGCATCTCTCCGGTTATGAAGCTTAAAAGCAATGATGAAGTAAGGTCTGATGATGTTAGAATTATAAAGCACACCCCTATTAACAGAAATGTTGACAACAACTCTGGGGTGGTGGAATTTGTTAGCCCTAATGGCGAGGTTTTCATTTGTAAAAGTGATTTGGAAATTGGTTTGTCTACTCAAGATAGATTATTCGAACTTGGTTGCTGTTGTAAAAATGACCTTGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTCTCAACTATGGTTCTACCATTTGTGAAATATGTGGACAGATACCAAAAAATATCAAAATTTCTGACTTCAGTAAGGTTTATTGTTCTTTGAAAGAATATGAAGCATTGAGGGAAAGAACTGCCAATGGCGATCCTGGTCCTGCACAAGTTCATTCAAATAATGGTGTAGATCCTGATGCTGTGGCTGCTATACGGAGGCAGCGGCTAAGTGAGATCGCTCTATGGTTTTTCCCTCATAATAGCAGTAACAATAACAACAATAGCAACATGGAAACATTTTCGCAGGTTATTTCTGAGCAGCCTTTTAATATCGTTACTGAAGATGCTGGCCCCGCACCAAATCCTGCAACTAAATGGGCCGTGGAAGGTACAGGGATCCTGCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCAAAAAGTGGCCTTCACATTCTACTTGGAGGCGTTTGTGCTTTAGCAGTGGTGATTTTCTTACGTTTTTTTGTGCTGACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACTCATGGTACTACCCATGCAACGTGA 1104 0.4194 MKEMDPMAEENVSATAKEEVIDDGSSNVEAGDLESCSRLSLEKDSGLPCCRVCQCTESDKRGDAALEFLGISPVMKLKSNDEVRSDDVRIIKHTPINRNVDNNSGVVEFVSPNGEVFICKSDLEIGLSTQDRLFELGCCCKNDLALVHYACALKWFLNYGSTICEICGQIPKNIKISDFSKVYCSLKEYEALRERTANGDPGPAQVHSNNGVDPDAVAAIRRQRLSEIALWFFPHNSSNNNNNSNMETFSQVISEQPFNIVTEDAGPAPNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALAVVIFLRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGTTHAT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0709 367 SMART ringv_2 118 168 IPR011016 GO:0008270
Lan12g0709 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 170 IPR013083 -
Lan12g0709 367 ProSiteProfiles Zinc finger RING-CH-type profile. 108 174 IPR011016 GO:0008270
Lan12g0709 367 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 23 365 - -
Lan12g0709 367 MobiDBLite consensus disorder prediction 1 27 - -
Lan12g0709 367 SUPERFAMILY RING/U-box 129 169 - -
Lan12g0709 367 Pfam RING-variant domain 130 167 IPR011016 GO:0008270
Lan12g0709 367 PANTHER ZINC FINGER, RING-CH-TYPE 23 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0709 Lan-Chr12 13876125 13881669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0709 7 356 C3H Transcription Factor Family AT5G08750 62.604 2.78e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0709 - - lang:109358685 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0709 12 13876125 13881669 Lan1g1540 1 25961398 25967516 LSH