Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0685 ATGAGTTTCTCAGCTAATTTTGCATCATTAGAGCACACTGCATTAATTAAAATAAAGCTTCAAGGCTTGAGAAGCGAGATGAGTGGAAGTGGCACAAAGCGCTATTCAAAGTGGGATTTGAGAGATGAACTTGAATATGCACATGATAGTAAGCAAGTGTGGTCCTCTGCAGATATTGCTGGCAATAATAGTTCAAAGTCATCCTATATGGAAAAAAATGATAGGTTAAAACCCAGAATGGGATTGTCAAGTAAGGAACCTTTTTCAAGAGGCAGAGGTTCAAATAAGGATGATATTTTGAATAAAGACTACAGAGTCTCGGATGCAACTATTGCAGATGGAAGTCACAGCATGAAGATGTCTCCAGGGTTTGAGGAAAGGAAACACAAGAGACATAGTCAGTCCCCAAAAAATGATCTCAGAAGGTCTGACAGGAGTAGTCGGAGCAGGAGCCCTGCACGTGGTCTTAGGTTGGATTCAGGAGTCAATGGCAGAAATAGAACGGGAGCTGGAGGATTGACACAAACATGTAGAGCTTTTGCCTCTGGGGAATGCAGAAGAGGCAGCCAATGCCATTTCCTTCACCACAATGATCAAAATTATGAGGATAATGGGGAAATTAGACGCAGGCAAGATGGAGCCCCCAAATATTTTGCTCCCCATGAGAATGGGGATTTCCTTAGGAGTGGAAGATCTAATGAAGGTTGTACTAATTTTGCAAAAGGAGGGTGTAGAATGGGGGCATCGTGCAAGTATGTGCATCATACAAATTCTGATTGCTTCAGTAAAGTTTCTGTGGATGAATCACCTAGAAAAAGGGAAATTGGTAGGAGGTGCATCGAGAATTCCTTTGAGCAGAGCAGCAGGTATGGTGTAAACCACAGTGGTGATACTCCTTGCAAGTTTTTTTCATCTGGAAATTGTCGAAATGGTAAACAATGTAGGTATTCTCATGATAGGCAAGCATGTATGAGCCCTAATAGAAGATTAAGGGATGATAGGTCAAGGAGTAATCATGGTGGAGATCAGGTGTTGGATAGACCAAAAGTGAGTGATTCAGTTAGTCATAATGAAAGGCTAAGATATGATAGATGGAGTTCAGACGGCAGTATGGCTGATTTAGATGAAGTCTGGGACCGTCCAAAACAGAATGATTTAGTTGGTGGCCCTGGTACAGTAAAGCAGGTTGAAAACAATAAAAATGAAATTTTGGGTGCCCCAGAGCTTGGATTCACTGCTCAACCATTGCGTGATGGATGGGACCATAGTTTAGATAAGAACATGCTACATTGCGAATCACCATTTTCAAGTGATGAGAAAGAAACCAACTGTTTGACATCAGAAGATACTTTTGCCAACATTCAGATTTCTCAGTCAATAGGTGCAGGCATTTGGCCTGGTGATGAGGAAATGTCTCCAGATTGGAAATATGGTGTGGGGTCTTCCAGCCATCTTGAAGTAAAGCACGGGGAGAATAAGCCACAAGTTTATCCAGGGCAAGGATTTAATCAGAATGCTCAGAATGTGAATTCTTCAAGCCGTCATGTATTTGTTCCAAGTCAACCGGAACTTTCCATTGTTCGTCCAAGAGTAGGAACTGTTGAAGGTATGCAGAACAAGGAAATATCTACTGATAAAAAGTACACTGTTGGGCCAGATATCATGGATGCAAGCATATCACAAGCTGGTTTAAGAAACCCTCCAACTCAGAACATTGTGAGTAATGAACAGCTTGCTCAACTTACGCGCCTCACAGCTTCTCTGGCACATATCCTTGGAACAGGTCAGCAGCTCCCACAAATGTATGCTCCTGTAAATTCTCATGATGCAAAGGACACTTCCTTCCCAGGCGGAACAGAAGGGTCTGGTAAGCCAGTGTCGACAACATTCATCAAGCCAGCTCCTGCTGTTGGATTCCAGAAGCAGTATGATCCAGTTTGTGATAGTATTGAGACAAAGAATGCTAATGCATGGGAAGGTCCCCCGGGCTTTTCTCCAATTAAAAAAATTGCAGAAGATGCTGTTGAGATTCTACCACTGTTGTCTAACTCAGGGAGACAAAATTTAATTCAGTTGCATCAAGGTGAAAACATTGAGGCTAATAAGGAGAATAATGAAGTGGTAGATGAAGAAATGCAGATTTCTCCATGTGATAATAAAACTAAAAAAGATAATGGTCCTTTGGGAAGCATGGACCAAAATGGTGTACATGATGAGGCCAAGAAAAAGGATGTGAAGGGGATCCGAGCATTTAAACATTCATTGGTGGAGTTCATTAAGGAGCTTCTGAAACCGACATGGAAAGAAGGTCATATTACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTCTCCGATAAAGTAACTGGCACAGTGCAGCGGTTACACATTCCTCAGACACAAGAGAAAATTGACCACTATTTATCATCATCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGCTCAAAAAGCTTAG 2490 0.4157 MSFSANFASLEHTALIKIKLQGLRSEMSGSGTKRYSKWDLRDELEYAHDSKQVWSSADIAGNNSSKSSYMEKNDRLKPRMGLSSKEPFSRGRGSNKDDILNKDYRVSDATIADGSHSMKMSPGFEERKHKRHSQSPKNDLRRSDRSSRSRSPARGLRLDSGVNGRNRTGAGGLTQTCRAFASGECRRGSQCHFLHHNDQNYEDNGEIRRRQDGAPKYFAPHENGDFLRSGRSNEGCTNFAKGGCRMGASCKYVHHTNSDCFSKVSVDESPRKREIGRRCIENSFEQSSRYGVNHSGDTPCKFFSSGNCRNGKQCRYSHDRQACMSPNRRLRDDRSRSNHGGDQVLDRPKVSDSVSHNERLRYDRWSSDGSMADLDEVWDRPKQNDLVGGPGTVKQVENNKNEILGAPELGFTAQPLRDGWDHSLDKNMLHCESPFSSDEKETNCLTSEDTFANIQISQSIGAGIWPGDEEMSPDWKYGVGSSSHLEVKHGENKPQVYPGQGFNQNAQNVNSSSRHVFVPSQPELSIVRPRVGTVEGMQNKEISTDKKYTVGPDIMDASISQAGLRNPPTQNIVSNEQLAQLTRLTASLAHILGTGQQLPQMYAPVNSHDAKDTSFPGGTEGSGKPVSTTFIKPAPAVGFQKQYDPVCDSIETKNANAWEGPPGFSPIKKIAEDAVEILPLLSNSGRQNLIQLHQGENIEANKENNEVVDEEMQISPCDNKTKKDNGPLGSMDQNGVHDEAKKKDVKGIRAFKHSLVEFIKELLKPTWKEGHITKEDYKAIVKKVSDKVTGTVQRLHIPQTQEKIDHYLSSSKPKLNKLVQAYVEKAQKA* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0685 829 Gene3D - 290 353 - -
Lan12g0685 829 MobiDBLite consensus disorder prediction 716 735 - -
Lan12g0685 829 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Lan12g0685 829 Gene3D - 173 260 - -
Lan12g0685 829 Pfam RNA-binding, Nab2-type zinc finger 177 195 - -
Lan12g0685 829 Pfam RNA-binding, Nab2-type zinc finger 236 254 - -
Lan12g0685 829 Pfam RNA-binding, Nab2-type zinc finger 299 318 - -
Lan12g0685 829 MobiDBLite consensus disorder prediction 325 355 - -
Lan12g0685 829 MobiDBLite consensus disorder prediction 58 170 - -
Lan12g0685 829 ProSiteProfiles Zinc finger C3H1-type profile. 295 321 IPR000571 GO:0046872
Lan12g0685 829 MobiDBLite consensus disorder prediction 120 152 - -
Lan12g0685 829 SUPERFAMILY CCCH zinc finger 297 319 IPR036855 GO:0046872
Lan12g0685 829 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 27 827 - -
Lan12g0685 829 MobiDBLite consensus disorder prediction 90 104 - -
Lan12g0685 829 ProSiteProfiles Zinc finger C3H1-type profile. 171 198 IPR000571 GO:0046872
Lan12g0685 829 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 27 827 - -
Lan12g0685 829 SMART c3hfinal6 171 197 IPR000571 GO:0046872
Lan12g0685 829 SMART c3hfinal6 294 320 IPR000571 GO:0046872
Lan12g0685 829 SMART c3hfinal6 231 256 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0685 Lan-Chr12 13659693 13665220 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan12g0685 zf-CCCH 0.00032 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0685 - K22909 gmx:100783856 886.715