Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0684 ATGTCCTCTTTTTACTTACTCTCATTTCTCCTCTTCCTCACTCTTTCCTCCGCCACCAACCACCACTACCACCACCATGCACCAAAACCATCACCCTTCATCGCTACCACCGCCACGCCGGCGATACAACAAGCCTGCAAAGCCACTCACAACCCTCTACAATGCGAATCCTCTCTCTCTCAATCCTCACTTCCACCAAACCCGACCTCCCTCCAGCTCCTCCAAGCCGCCATGGCCCTCTCCTCCACCAATCTCGCCACCGCCCTAACCATGCTCAAATCCCTCCTCGACGCCTCCGCAGACAGTAAAAACCGCACAGTCGCCGCCACCACCTGCCTGGAACTCCTCCACAACTCCAACCGTCGCATTTCCCTCGCCGACGAGTCCCTGCCACGTGGCAAGACCAAAGACGCACGCGCCTGGCTCAGCGCCGCACTCGCTTACACCTACGATTGCTGGAACTCCCTCAAGTACGCCAACGACACAAAACAAGTCGGCGAAACGATGTCGTTCCTCGATTCACTGTCCACGCTCAACAGCAACGCGCTCAGCATGGCGTTTAACTACGACGCGTTTGGAAACGACACCGCGTCATGGAAACCGCCAACGACAGAGCGTGACGGGTTTTGGGGGACAATCGGGTCGGGTTATGGGTCCCGACCCGTAACCGAATTTCCCGATAAGTCAAATGCGGATGTTACAGTTTGTAAGGGAGAGGAAAGTGGGTGTTTGAAGACGGTTCAGGAAGCAGTTAATAAGGCGCCGGATAACGTTAACGGCGGTGAGGGGAAGAGATTTGTGATATATATAAAGGAAGGGGTTTATAAAGAGACCGTTAGGGTTCCGTTAGAGAAAGGGAATGTGGTGTTTTTGGGTGACGGAATGGGGAAGACGGTGATTACTGGCTCTGCGAATGTGGGGGTGGCTGGGATGACTACCTATAATTCCGCCACAGTCGCGGTTCTTGGCGATGGATTCATGGCAAAGGACCTTACAATAGAAAACACAGCAGGTCCTGATGCTCATCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCCATCATTGAGAATTGTGAATTCTTAGGCAACCAAGACACCCTTTATGCTCATTCGCTGCGCCAATTTTATAAATCATGCCACATCGAAGGCAATGTGGACTTCATCTTTGGCAACTCTGCTTCAGTTTTCCAAGATTGCCAAATCTTAGTTCGTCCGAGACAAGTGAAGCCTGAGAAAGGTGAGAACAACGCTGTCACAGCACATGGCAGGACAGACCCCGCACAGGCCACAGGGTTTGTTTTCCAGAACTGCTTGATCAATGGAACTGAGGAATATATGGCATTGTATCATAGCAAACCTACAGTGCACAAGAATTTCTTGGGCAGACCATGGAAGATGTATTCTAGAACAGTTTTCCTTCAATGTCAGTTGGAAGTTCTTGTTACACCCCAGGGTTGGATGCCATGGGATGGTGACTTTGCACTCAAGACACTTTACTATGGGGAATTTGAGAATTCAGGACCTGGCTCTGATTTGTCTCAGAGGGTGCCCTGGAGTAGCAAGATCCCTGCTGAACATGTATTGACATATTCAGCTCAGAATTTCATTCAAGGAGATGATTGGATTCCATCATCTCAGTTGTCATCTGCCCCTTTTGTAGTTACCAACTAA 1674 0.5018 MSSFYLLSFLLFLTLSSATNHHYHHHAPKPSPFIATTATPAIQQACKATHNPLQCESSLSQSSLPPNPTSLQLLQAAMALSSTNLATALTMLKSLLDASADSKNRTVAATTCLELLHNSNRRISLADESLPRGKTKDARAWLSAALAYTYDCWNSLKYANDTKQVGETMSFLDSLSTLNSNALSMAFNYDAFGNDTASWKPPTTERDGFWGTIGSGYGSRPVTEFPDKSNADVTVCKGEESGCLKTVQEAVNKAPDNVNGGEGKRFVIYIKEGVYKETVRVPLEKGNVVFLGDGMGKTVITGSANVGVAGMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRLDSDLSIIENCEFLGNQDTLYAHSLRQFYKSCHIEGNVDFIFGNSASVFQDCQILVRPRQVKPEKGENNAVTAHGRTDPAQATGFVFQNCLINGTEEYMALYHSKPTVHKNFLGRPWKMYSRTVFLQCQLEVLVTPQGWMPWDGDFALKTLYYGEFENSGPGSDLSQRVPWSSKIPAEHVLTYSAQNFIQGDDWIPSSQLSSAPFVVTN* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0684 557 PANTHER PECTINESTERASE 4 546 - -
Lan12g0684 557 PANTHER PECTINESTERASE 4 546 - -
Lan12g0684 557 SUPERFAMILY Pectin lyase-like 229 546 IPR011050 -
Lan12g0684 557 CDD PMEI-like_3 45 185 - -
Lan12g0684 557 SMART PMEI_2 37 185 IPR006501 GO:0004857
Lan12g0684 557 Pfam Plant invertase/pectin methylesterase inhibitor 41 185 IPR006501 GO:0004857
Lan12g0684 557 Gene3D - 230 554 IPR012334 -
Lan12g0684 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 188 IPR035513 -
Lan12g0684 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 184 IPR006501 GO:0004857
Lan12g0684 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 185 IPR035513 -
Lan12g0684 557 Pfam Pectinesterase 232 540 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0684 Lan-Chr12 13648227 13651453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0684 42 542 Carbohydrate Esterase AT5G09760 65.613 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0684 - - gmx:100819675 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0684 12 13648227 13651453 Lan1g1565 1 26367963 26371756 LSH
Lan12g0684 12 13648227 13651453 Lan15g0531 15 12350789 12353749 PCT
Lan15g0531 15 12350789 12353749 Lan12g0684 12 13648227 13651453 PCT