Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0682 ATGATGAGTTCTAGTGAAGGAGATAATGATATATTCTTTGACTCAATGGATAGCTTGATAGCTCAAGATTGTGGTTTTGCCAAACAAGAGTTTGGTTCAGAGAGCTACGGGTGTCGTTATGGTTATGGTTATGAAATTTGGGTGAATGAGCCTCTTAGTGTGAAAGAAAGGCGGGGGCAATTTCTTCAGACTATAGGTTTAGCTGATACTTCTGCTTCCAAGATTTATTCAAAGGAGAAAATGGTTTTCCTTGAAAGGATCAAGGAGTGCAGTGGAGCAGTCTCAAATGCTTGCAGTTCACACACTGATCAATTATTTGAGAAGCCGGTTCTCTCTGGGTGCAAATCAGCTTCTGAAGCAGAAGTCTTGCTTGATGGACTGAAAGGGAGGCCCCAACATAAACCAGATGCATGTTTTGAAGGGAGAGTGTGTGAACTGTCTTTTACAGCTCAGGAGCACAGACACAGAGATGCTGAGGCCCGAGAAGAATTTCAGGATTTCGAGATGGGTATAAAGAAAATGAAAAACTGGTGGAAGCGATTTGTACATTTCAAGAAAGACAGTGAAGGAAAAGTGAGATCAAAATTGAATACAGGGACGAATAGAACTCGTAAAGTAAAGGTAAGACAAAACAAAAAGAGGTTTCTTGAGTTCAGTGGGCTATACACTGGACAACAGATTAGAGCACACAAAGGCTTAATCTGGACTATGAAATTTAGTCCCAGTGGTCTGTATTTAGCGAGTGGAGGTGAAGATGGCGTTGTGCGCATATGGCGCATTATTTCACGGGATACATCCAGTATTTGTTTCACCACAGAAGATAGTACTGCTAGCAAAGTGAAACATGACAACTCTTATCCTTGGAAGAAACATTCAAGTCAATCCTTCATTTTTCTTCCGAATAAGATTTTCCAAATCGAGGAGCCACCACTACAAGAATTTTATGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTATCCTCGTCTATGGATAAAACTGTTCGCCTGTGGCAAATTGGTTGTAATCATTGTCTTAGTGTTTTCCATCACAATGACTATGTGACATGTGTTCAATTCAACCCTGTCGATGATAAATACTTCATCAGTGGGTCCATAGATGGTAAAGTTCGGATATGGGGAATATGTGAAGAGCGAGTCGTTGATTGGGCAGATATACGAGATGTCATAAGTGCCATAAGTTACCAGCATGATGGGAAAGGATTTGTAGTTGGTTCCGTAACAGGCGCTTGTCACGTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCACAGATACTTGTCCATGGAAAGAAGAGAGCATCAGGCACTAAGATAACCGGCATCCAGTTTTCTGAAAACAACCATCAGAGAATTATGATCACATCAGAAGATTCCAAAATTTGCATATTCAATGGCATTGAGCTTGTTCATAAATACAGAGCCCTTCCAAAATCAGGAAGTCAGATTCATGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGATTCTCATGTGTATGTATGGAACTACAGCGACTCTAGAAATGCTTTCTCCAAACCGAGAAAATCTGAGTACACTTGTGAGTACTTTTTCTCCAGTGGTGTTACTGTTGCAATACCTTGGTCAGGCATGAATGCTGAACAAAGGAGCTCGTGCCGTAATTTTGCGCAGCGTTCTTCAGAAACGCAAAACCAACTAGAAGCTGCTCCATGCAAAATTTCGGAACGGTTTTCTCTTGGTAGTTGGTTTTCCATTGATGGTACTTGCAGAGGCTCTACAACATGGCCAGAGGAGAAACTTCCCAGATGGGATTTACCTCTTGCAAGGGATGAATATGAACACCAAAAGTTATATCACAATGATACATGCTTTGATAGAGGTGTATCAGAAACATGGGGACTATCAATTGTGGTAGCTGATTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCTATTAGGCTTTAA 2010 0.4075 MMSSSEGDNDIFFDSMDSLIAQDCGFAKQEFGSESYGCRYGYGYEIWVNEPLSVKERRGQFLQTIGLADTSASKIYSKEKMVFLERIKECSGAVSNACSSHTDQLFEKPVLSGCKSASEAEVLLDGLKGRPQHKPDACFEGRVCELSFTAQEHRHRDAEAREEFQDFEMGIKKMKNWWKRFVHFKKDSEGKVRSKLNTGTNRTRKVKVRQNKKRFLEFSGLYTGQQIRAHKGLIWTMKFSPSGLYLASGGEDGVVRIWRIISRDTSSICFTTEDSTASKVKHDNSYPWKKHSSQSFIFLPNKIFQIEEPPLQEFYGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNHCLSVFHHNDYVTCVQFNPVDDKYFISGSIDGKVRIWGICEERVVDWADIRDVISAISYQHDGKGFVVGSVTGACHVYVASGKYFQLEAQILVHGKKRASGTKITGIQFSENNHQRIMITSEDSKICIFNGIELVHKYRALPKSGSQIHGSFTSSGKHIISVGEDSHVYVWNYSDSRNAFSKPRKSEYTCEYFFSSGVTVAIPWSGMNAEQRSSCRNFAQRSSETQNQLEAAPCKISERFSLGSWFSIDGTCRGSTTWPEEKLPRWDLPLARDEYEHQKLYHNDTCFDRGVSETWGLSIVVADCDGTIKTFHNFGLPIRL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 260 - -
Lan12g0682 669 Pfam WD domain, G-beta repeat 227 258 IPR001680 GO:0005515
Lan12g0682 669 Pfam WD domain, G-beta repeat 310 344 IPR001680 GO:0005515
Lan12g0682 669 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 386 IPR001680 GO:0005515
Lan12g0682 669 SMART WD40_4 389 428 IPR001680 GO:0005515
Lan12g0682 669 SMART WD40_4 480 521 IPR001680 GO:0005515
Lan12g0682 669 SMART WD40_4 433 479 IPR001680 GO:0005515
Lan12g0682 669 SMART WD40_4 348 387 IPR001680 GO:0005515
Lan12g0682 669 SMART WD40_4 307 345 IPR001680 GO:0005515
Lan12g0682 669 SMART WD40_4 220 259 IPR001680 GO:0005515
Lan12g0682 669 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Lan12g0682 669 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Lan12g0682 669 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 386 - -
Lan12g0682 669 PANTHER WD REPEAT DOMAIN 44 2 669 IPR040324 -
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Lan12g0682 669 SUPERFAMILY WD40 repeat-like 222 659 IPR036322 GO:0005515
Lan12g0682 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 530 IPR001680 GO:0005515
Lan12g0682 669 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 2 669 - -
Lan12g0682 669 Gene3D - 219 546 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0682 Lan-Chr12 13629032 13635285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0682 311 463 U-box Gene Family AT2G33340 30.357 4.90e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0682 K20241 - gmx:100819135 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0682 12 13629032 13635285 Lan1g1569 1 26424661 26430104 LSH
Lan12g0682 12 13629032 13635285 Lan15g0536 15 12442705 12447456 PCT
Lan12g0682 12 13629032 13635285 Lan3g0721 3 13203804 13208768 PCT
Lan15g0536 15 12442705 12447456 Lan12g0682 12 13629032 13635285 PCT
Lan3g0721 3 13203804 13208768 Lan12g0682 12 13629032 13635285 PCT