Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0681 ATGGTTAGAGACGATCTATACATCACGGCTCCCAGTTTCTTCCGGTGTCCGATTTCACTCGACGTGATGAAATCCCCTGTGAGTCTCTGCACTGGAGTAACCTACGACCGCACCAGCATCCAACGCTGGCTCGACAACGGTAATAACACGTGTCCAGCCACCATGCAAGTCCTATACACAAAAGATTTCATTCCTAACAGTAATTTGCAGAGGCTTATTCAGATCTGGTCCGACTCGGTCCAACAACGGGTTGACTCGCCCGAGTCCAGAGCCGTGACTGAATCTGATTCAGTTCCTTCCAGGGACCAAGTCCTCATCGCTGTCGCTGATGTCGAGGGAAACAGCCGACTTGACCCGCTCGTGAAAATTGTGCGTTTCGCTTTAGATTCCGATGAGAACCGCGATTTTCTCGTGAAGATTGTAGGCTTCGTGGCTAGGCTAGTTGGTTTGCTTCTCAATGTCGATGGTGGAGTCGAATTTCTCGAGCTGGTTGTGAAGGCTTTGGATTTGGTTCTAGAGAAAATCGAAGATCACGAGTGGTTGAATAACTCGATGCTGAAGAAGCAGCGCGAGGGAGAGAGCAGATGCGACTGCTTAGATTCTCTGCTTCTCGTTTTACAAGAAGGAGGTTCCGATTCAAGGATTGCATCGGTTAGGGTTTTGAAATCCATCGCCATGGACGCAGAATCGAAGCAATTGATAGCAGAAAAAGAAGGTCTACTATCCGAATTGCTCAAGCTAATCACACCGGAGAAAGATCCGTTGTTAATCGAAAACGGCTTGTCATGTTTGATCGCGATAACGACGCCGAAACAAAACAAGGTGAAGCTAGTCAATCTCGGAGCCATCAGAACATTCTCGAAACTTCTATTGGAACCAAATATGAGCGTTTCGATTGTGGAGAAAGTGCTGAAGCTACTGGAAACGATGTCGTCGAGAAAGGAAGGGAGGGTTGAAATATGCGAGGAGCCGGAGTGCGTGGCGGCGATACTAAACAAAGTGATAAAGATTTCAAACGTTGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATCAGAAGGCGCAAGAAGCGGTTATCAAGGCTAACGGCTTAACCAAGATTCTGCTTCTGATGCAGAGTAATTGTTCTCCCTCGGTTCGCAAAATGTGTTCAGAATTGCTTAAGATTTTTAGGGTTAATTCCAAGTCTTGTCTCTCGTGTTATGACACCAAAACGACCCATATTATGCCATTTTGA 1257 0.4733 MVRDDLYITAPSFFRCPISLDVMKSPVSLCTGVTYDRTSIQRWLDNGNNTCPATMQVLYTKDFIPNSNLQRLIQIWSDSVQQRVDSPESRAVTESDSVPSRDQVLIAVADVEGNSRLDPLVKIVRFALDSDENRDFLVKIVGFVARLVGLLLNVDGGVEFLELVVKALDLVLEKIEDHEWLNNSMLKKQREGESRCDCLDSLLLVLQEGGSDSRIASVRVLKSIAMDAESKQLIAEKEGLLSELLKLITPEKDPLLIENGLSCLIAITTPKQNKVKLVNLGAIRTFSKLLLEPNMSVSIVEKVLKLLETMSSRKEGRVEICEEPECVAAILNKVIKISNVATEHAVTTLWSVCYLFRDQKAQEAVIKANGLTKILLLMQSNCSPSVRKMCSELLKIFRVNSKSCLSCYDTKTTHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0681 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lan12g0681 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 418 - -
Lan12g0681 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Lan12g0681 418 SUPERFAMILY ARM repeat 124 400 IPR016024 -
Lan12g0681 418 Gene3D - 171 406 IPR011989 -
Lan12g0681 418 SUPERFAMILY RING/U-box 5 78 - -
Lan12g0681 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lan12g0681 418 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lan12g0681 418 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Lan12g0681 418 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0681 Lan-Chr12 13618803 13620258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0681 1 418 U-box Gene Family AT5G09800 52.941 7.71e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0681 - - gmx:100799627 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0681 12 13618803 13620258 Lan1g1570 1 26476790 26478210 LSH