Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0677 ATGTATGCTTCTACTTCCTTTACATCACACAACATCCATGAACTTCTTGGTAATTCACACTCAAGAAGGTTACTCCTGCAAAACCCACTTAACCAAGCCAACCCCCCTGCATCTTCCATAAACAGCCATAACTCCACAAATCTATATCTCGGTGGCCGAAATTTCGATGCAAATGTTGTCATGATACTCTCAGTCCTATTGTGTGCTGTTATTTGCTTACTAGGCTTGAACTCCATCATAAGATGTGTGTTGAGGTGTTCATACTTGGTCATTAGTATTGATTCATCCAGAACAAGCAACCCTTCACCATCATTAGCTAACATAGGAATCAAGAAAAAAGTTCTTAAGACTTTCCCTATAGTAACTTATTCAGCTGAGGTGAATCTTCCAGGTATGGACACTGAGTGTGTAATATGCCTCTCAGAGTTCACCAAGGATGAGAAGGTTCGCATTTTGCCTGAGTGCAACCATCTTTTTCATGTTCCTTGCATTGATAAATGGCTTAGTTCACACTCATCTTGCCCCAAGTGCAGACAGTGCCTAATGGAGACTCGCCATAAGATTGTTGGATCACAACCTGGACGTGTGGTACCACTGCCAGAGCCAGAAACCATTATAAGGATTGAACCACTTGAGCCAGAAAGTTTAGTGCGTAACTATAGGGAATCAAGCTAA 675 0.4178 MYASTSFTSHNIHELLGNSHSRRLLLQNPLNQANPPASSINSHNSTNLYLGGRNFDANVVMILSVLLCAVICLLGLNSIIRCVLRCSYLVISIDSSRTSNPSPSLANIGIKKKVLKTFPIVTYSAEVNLPGMDTECVICLSEFTKDEKVRILPECNHLFHVPCIDKWLSSHSSCPKCRQCLMETRHKIVGSQPGRVVPLPEPETIIRIEPLEPESLVRNYRESS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0677 224 Pfam Ring finger domain 135 178 IPR001841 -
Lan12g0677 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 183 IPR013083 -
Lan12g0677 224 PANTHER RING-H2 FINGER PROTEIN ATL78 1 223 IPR044602 GO:0016567|GO:0016740
Lan12g0677 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
Lan12g0677 224 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Lan12g0677 224 SUPERFAMILY RING/U-box 114 184 - -
Lan12g0677 224 SMART ring_2 136 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0677 Lan-Chr12 13578051 13578855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0677 23 182 C3H Transcription Factor Family AT3G10910 47.273 1.29e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0677 K19040 - gmx:100780127 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0677 12 13578051 13578855 Lan1g1873 1 33908397 33909642 LSH
Lan12g0677 12 13578051 13578855 Lan1g1572 1 26597809 26598552 LSH
Lan12g0677 12 13578051 13578855 Lan15g0539 15 12521876 12522715 PCT
Lan12g0677 12 13578051 13578855 Lan14g0491 14 10495047 10496716 PCT
Lan15g0539 15 12521876 12522715 Lan12g0677 12 13578051 13578855 PCT
Lan14g0491 14 10495047 10496716 Lan12g0677 12 13578051 13578855 PCT