Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0676 ATGTATGCTTCTACTTCCTTTACTTCACACTTCATCCATGAACTTCTTGGGGACTTCCACTCAAGAAGGTTACTCTTGCCAAACCCACTTAACCAATCCAATTCCCTAGTAGCTTCCATAAACAGCCACAACTTCACAAATCTAAATCTTGGAAGCTGTAATTTTGATGCAAATGTTGTCATGGTGCTCTTAGTCATATTGTGTTTTATTATTTGCTTACTAGGATTGAACTCTATCATAAGGTGTGCCTTGAGGTTTTCAGACTTATTCATTCATATTGACTCATCCAGCACAAGCAACCTTTCAGCAAGATTAGAAGCCAACACAGGAATTAAGAAGAAAGCTCTTAAAACTTTTCCTATAGTGAGCTACTCAACTGAGATGAATCTTCCAGCTCCAGGTTTGGACACTGAGTGCAACCACGGTATCTATGTTCCTTGCATTAATAAATGGCTGAGTTCACACTCATCTTGCCCCGAGTGTAGACAGTGTCTCGTTGAGACTTATCACTACCCTTTTGCTTCTCAAATTTCACTGTTGAATTTCCTGTAG 552 0.3949 MYASTSFTSHFIHELLGDFHSRRLLLPNPLNQSNSLVASINSHNFTNLNLGSCNFDANVVMVLLVILCFIICLLGLNSIIRCALRFSDLFIHIDSSSTSNLSARLEANTGIKKKALKTFPIVSYSTEMNLPAPGLDTECNHGIYVPCINKWLSSHSSCPECRQCLVETYHYPFASQISLLNFL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0676 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 175 IPR013083 -
Lan12g0676 183 PANTHER RING-H2 FINGER PROTEIN ATL78 1 139 IPR044602 GO:0016567|GO:0016740
Lan12g0676 183 PANTHER RING-H2 FINGER PROTEIN ATL78 138 171 IPR044602 GO:0016567|GO:0016740
Lan12g0676 183 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 139 - -
Lan12g0676 183 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 138 171 - -
Lan12g0676 183 SUPERFAMILY RING/U-box 137 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0676 Lan-Chr12 13569886 13570533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0676 55 174 C3H Transcription Factor Family AT3G10910 41.429 1.00e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0676 K19040 - gmx:100527126 167.162