Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0670 ATGGATTTCGACGAATATGAGTATTTGGAGAAGACAGTGGAGGATCATAACGACAAAGTTCCCTCGAAGAAAAAAGATAGCGATAGGAGTTCCCGGAAGCGTGATGTCGATGATGTCCTGGACGCCGCCGATGACCGCCGCAGGAGCCGGAGGTCCAGAGGAGACGACGAGAATGGTTCCTCGAGGGAGAAAGAGAGAGATAAGGATAGGATAAGCACAGAAAGAGAGAAAGGAAGAGACAAAGATAGAGATAGAGAAAGGAGGGATCAGAGAAAGAGGGAGAAGGAGAGAGAGAGATATAGAAGGAGTAGGAGTCGTTCTGAGAGAGATACCAGAGAAGTAGATTTTGAATCCCGAGATGCACGGAGAGGATTTAGGGATAAGAAAGAGGCTGTGGAGCCTGAGGCTGATCCAGAGAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACAGAAAGAGATGTATATGAGTTCTTCTCAAAGGCTGGCAAGGTGAGAGATGTCCGACTGATCATGGATAGGCACTCAAAAAGATCTAAGGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTGTCTGGCCAACTTCTTTTCGGGCAACCAGTAATGGTCAAACCTTCTGAGGCTGAAAAGAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCAGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCTGCTGCGGGAGATTTTTGAGCCATTTGGCCCGGTGGAGGTTGTACAACTTCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTATTCAATTTGCCCAACTTGAGCATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGAAGGATTGTCAAGGTTTCATCTGTAACTGATCATCTTGGAAACCAAGATACAACTGCAAAATCTACTGACTTAGATGATGATGAAGGTGGAATGGTTTTAAATGCACAATCAAGAGTAGAGCTTATGCGTAAGCTGGCTGGTGATGCTGTGAGTGCTGGTGTCCCCATGGTGAATGGATCCGCTCCTGCTGCTATTAGCTTGCCTATTGGTAATCCAGGAGTAGTTTCCACAGCAGCTTTCCCATCACAATTTATCCCTACTCCAGTGGCAGAAACTGTAGGAATCCCTAGCGAGTGTTTACTCTTGAAGAATATGTTTGATCCAAGCACCGAGACAGAGCCAGATTTTGATTTAGACATCAAAGAGGATGTAGAAGAAGAGTGCTCCAAGTATGGCCGGGTGAAGCATATTTATGTCCACAAAAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACAGTGAAAGCATCAAGTGATGCTCAACATGCATTGCACATGAGATGGTTTGCACGCAAACTGATTTCAGCTATCTTCGTGCAACCTCACGAATATGAAGCCAAGTTTAAAGGGGAATGTTGA 1518 0.4532 MDFDEYEYLEKTVEDHNDKVPSKKKDSDRSSRKRDVDDVLDAADDRRRSRRSRGDDENGSSREKERDKDRISTEREKGRDKDRDRERRDQRKREKERERYRRSRSRSERDTREVDFESRDARRGFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRHSKRSKGVGYIEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNASSGAAGVAGPYGAVDRKLYVGNLHFNMTESLLREIFEPFGPVEVVQLPLDLETGHCKGFGFIQFAQLEHAKAAQSLNGKLEIAGRIVKVSSVTDHLGNQDTTAKSTDLDDDEGGMVLNAQSRVELMRKLAGDAVSAGVPMVNGSAPAAISLPIGNPGVVSTAAFPSQFIPTPVAETVGIPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVHKRSAGFVYLRFETVKASSDAQHALHMRWFARKLISAIFVQPHEYEAKFKGEC* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0670 505 Gene3D - 406 504 IPR012677 -
Lan12g0670 505 SUPERFAMILY RNA-binding domain, RBD 136 227 IPR035979 GO:0003676
Lan12g0670 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Lan12g0670 505 MobiDBLite consensus disorder prediction 1 116 - -
Lan12g0670 505 CDD RRM3_RBM39_like 410 492 - -
Lan12g0670 505 Gene3D - 241 337 IPR012677 -
Lan12g0670 505 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 338 429 IPR029123 -
Lan12g0670 505 SUPERFAMILY RNA-binding domain, RBD 244 322 IPR035979 GO:0003676
Lan12g0670 505 TIGRFAM SF-CC1: splicing factor, CC1-like family 28 499 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lan12g0670 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 220 IPR000504 GO:0003723
Lan12g0670 505 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 96 - -
Lan12g0670 505 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 61 504 - -
Lan12g0670 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 212 IPR000504 GO:0003723
Lan12g0670 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 314 IPR000504 GO:0003723
Lan12g0670 505 PANTHER CC1-LIKE SPLICING FACTOR 61 504 - -
Lan12g0670 505 PANTHER CC1-LIKE SPLICING FACTOR 1 96 - -
Lan12g0670 505 MobiDBLite consensus disorder prediction 9 116 - -
Lan12g0670 505 Gene3D - 69 228 IPR012677 -
Lan12g0670 505 SMART rrm1_1 246 319 IPR000504 GO:0003723
Lan12g0670 505 SMART rrm1_1 412 489 IPR000504 GO:0003723
Lan12g0670 505 SMART rrm1_1 144 216 IPR000504 GO:0003723
Lan12g0670 505 CDD RRM1_RBM39_like 144 216 - -
Lan12g0670 505 SUPERFAMILY RNA-binding domain, RBD 407 494 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0670 Lan-Chr12 13497715 13503979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0670 217 318 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 1.93e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0670 12 13497715 13503979 Lan1g1857 1 33696967 33704229 LSH