Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0652 ATGACAGGTAAGAGAAACCAAACAAGTCCTGTGGGAAGCCCAACATCAGGGAACATATCAGACAGCTCTTTATCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTAAGCCGTATCATGAAAAAGGCACTCCCAGCCAATGCTAAAATCTCAAAGGAAGCAAAGGAAACAGTGCAGGAATGTGTGTCAGAGTTCATAAGCTTCATCACTGGTGAAGCCTCAGACAAGTGTCAAAGGGAAAAGAGGAAGACAATCAATGGTGATGATCTTCTTTGGGCTATGACAACTCTTGGGTTTGAAAACTATGTTGGACCCTTGAAGGTTTATCTCAACAACTTCAGGGAAACTGAGGGAGAAAAGGGTAATTCTATGGCTAAACAAGAAGATCAGTGTCCAGAAGCTAGTGATAATGGTTTCAATAATGGTGGATTTTATTCTGTTGGAGGGCTTACAAGTAATTACGGTGGAGGAAGTTATAAAATTGTCTGA 492 0.4167 MTGKRNQTSPVGSPTSGNISDSSLSKEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNFRETEGEKGNSMAKQEDQCPEASDNGFNNGGFYSVGGLTSNYGGGSYKIV* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0652 163 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lan12g0652 163 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lan12g0652 163 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lan12g0652 163 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan12g0652 163 MobiDBLite consensus disorder prediction 1 27 - -
Lan12g0652 163 SUPERFAMILY Histone-fold 28 137 IPR009072 GO:0046982
Lan12g0652 163 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 7 136 - -
Lan12g0652 163 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan12g0652 163 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lan12g0652 163 Gene3D Histone, subunit A 19 140 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0652 Lan-Chr12 13361670 13362638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0652 12 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.333 1.27e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan12g0652 CBFD_NFYB_HMF 2.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0652 K08065 - gmx:100810059 246.899