Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0645 ATGGGCAAGATAGTTCCGCATCAAAAAACCATGAGAGAGCTTTTCTATCAGTTTTACACCAAAACAATAGTCCTATTAACATACATGTTAATATCACTTATCCTTATCATTCAATATCTTAAATCAATTCCAAGACCAATTGCAACCAAAACCCAATACCACAAATTCATTGAAAAGAAGAACCCCACAATTTGCTTCACACGAAGATTGAGGCCACAGCACATAGAATGCATGGTGTGTTTAACAGATTTTGAAGAAGATGATAAAGTGAGGAAGTTGGAATGCAAACACACTTTTCACAAGGATTGTTTGGATAACTGGTTGCAGAAATATTGTGCTACTTGTCCACTCTGCAGGAACAAAGTGTTGCCATCAAATGTTGTGACCAAGTATCAAGTCCAGCTTCAAAATCATGTAGGATATTATGATGGGAATGATGAACAGCTTAGGTCTTTGTTATCTATATTATGGGGTGGTAGTACTTTGAATAGATATCTCTGA 501 0.3613 MGKIVPHQKTMRELFYQFYTKTIVLLTYMLISLILIIQYLKSIPRPIATKTQYHKFIEKKNPTICFTRRLRPQHIECMVCLTDFEEDDKVRKLECKHTFHKDCLDNWLQKYCATCPLCRNKVLPSNVVTKYQVQLQNHVGYYDGNDEQLRSLLSILWGGSTLNRYL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0645 166 Pfam Ring finger domain 76 119 IPR001841 -
Lan12g0645 166 CDD mRING-H2-C3H2C2D_ZSWM2 76 119 - -
Lan12g0645 166 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Lan12g0645 166 SUPERFAMILY RING/U-box 55 125 - -
Lan12g0645 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 10 160 - -
Lan12g0645 166 SMART ring_2 77 118 IPR001841 -
Lan12g0645 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 124 IPR013083 -
Lan12g0645 166 PANTHER - 10 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0645 Lan-Chr12 13290088 13291535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0645 76 132 C3H Transcription Factor Family AT1G15100 49.123 4.49e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0645 K16282 - gmx:102669811 211.075