Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0612 ATGGATGAGGAAGAGCACGAGGTTTACGGTGGAGAGATCCCTGACGTCGAAGGAGATCACGACAATCCTGACATCGACATGTCCGCCGCCGATGATGACGCCGCCGTGAAGGAGCTCGATGAGATGAAGCGCCGCTTGAAGGAGATGGAAGAGGAAGCCGCCGCTCTCCGCGAGATGCAAGCTAAGGTTGAGAAAGAGATTGGCTCTGTTCAAGATCCTGCTGCTGCTGCTTCTCTGGCAAACAAGGAGGAGGCAGATACACGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCTTGTGGTACAGTGAACAGAGTCACCATTCTGACCGATAAGTTTGGCCAGCCTAAAGGTTTTGCGTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCCTCTTGAATGAAACTGAATTGCATGGCCGTCAATTGAAGGTTTTACCTAAGAGAACTAATGTGCCAGGAATGAAACAATATCGTCCTGGCCGCTACAATCCTTACATGGCTTATGGCTTCAGGAGGCCACATCCTCCCCCTTACTTTTACCCCTCTTATGGATATGGGAAGGCTCCTAGGTTTACTAGGGCAACTCGGTACATGCCCTATTACTAG 651 0.4885 MDEEEHEVYGGEIPDVEGDHDNPDIDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPAAAASLANKEEADTRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALLLNETELHGRQLKVLPKRTNVPGMKQYRPGRYNPYMAYGFRRPHPPPYFYPSYGYGKAPRFTRATRYMPYY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0612 216 CDD RRM_II_PABPs 89 160 - -
Lan12g0612 216 SUPERFAMILY RNA-binding domain, RBD 79 186 IPR035979 GO:0003676
Lan12g0612 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Lan12g0612 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Lan12g0612 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Lan12g0612 216 PANTHER - 1 214 - -
Lan12g0612 216 Gene3D - 15 171 IPR012677 -
Lan12g0612 216 MobiDBLite consensus disorder prediction 1 28 - -
Lan12g0612 216 Coils Coil 32 66 - -
Lan12g0612 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 214 - -
Lan12g0612 216 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0612 Lan-Chr12 12998762 13002843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0612 85 159 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 3.20e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0612 K14396 - gmx:100789721 328.176