Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0607 ATGAAGAGACTTGGAAGTTCAGATTCTTTGGGTGCTCTCATGACAATTTGTCCACAAACAGAGGAACACAGTCCGAGGAACAATAACCACGTTTATGGAAGGGAGTTTCAATCCATGTTAGAAGGACTTGATGAGGAAGGGTGTGGTCTTGAAGAGACAGGGCATCACTCTGAGAAGAAAAGGAGACTTAGCGTAGATCAAGTGAAGGCTTTGGAGAAAAACTTTGAGGTTGAGAACAAGCTTGAACCAGACAGAAAGGTGAAGCTTGCACAAGAACTTGGGTTGCAGCCTAGACAAGTTGCAGTTTGGTTCCAAAACCGTCGTGCTAGATATAAAACCAAACAATTGGAAAGGGATTATGGAGTTCTCAAAGCCAATTATGATGCTCTTAAACTTAACTATGATACCCTCCAAAAGGACAATGAGGCCTTACTCAAAGAGATTAAGGAATTGAAATCAAGGGTGCAAGAAGAGAACACTGAAAGTGATGCATCAGTGAAAGAAGAGATGTTAACACTGCATCAAGACTCTTCAGAAGACTTAAAATATGAGTGTTTCAACATGAACAACAGTGAAGGGGTTGAAGCTGGTTCACTATTCCCTTCAGATTTCAACAAAGACGGGGCTTCAGATAGCGACTCTAGCGCGATCTTAAACGAAGAACAAAACCATAGCCCCATAAACCTAGCGATTTCTTCATCTGGGGTGCTTCAAAGTCACAACCTTTTGATGTCTCCTTCACTCAAGTTCAATAATTGTTCATCACCTTCACCTTCTTCCATTAATTGCTTCCAGTTCCAGAAAGCTACTTATCAGACACAGTATGTGAAGATGGAAGAACACGATTTCTTCAGTGCAGACGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCAACACTGCAGTGGTACTGTTCTGATTTCTAA 927 0.4164 MKRLGSSDSLGALMTICPQTEEHSPRNNNHVYGREFQSMLEGLDEEGCGLEETGHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARYKTKQLERDYGVLKANYDALKLNYDTLQKDNEALLKEIKELKSRVQEENTESDASVKEEMLTLHQDSSEDLKYECFNMNNSEGVEAGSLFPSDFNKDGASDSDSSAILNEEQNHSPINLAISSSGVLQSHNLLMSPSLKFNNCSSPSPSSINCFQFQKATYQTQYVKMEEHDFFSADEACNFFSDEQAPTLQWYCSDF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0607 308 Gene3D - 53 121 - -
Lan12g0607 308 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Lan12g0607 308 SUPERFAMILY Homeodomain-like 47 116 IPR009057 -
Lan12g0607 308 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Lan12g0607 308 SMART HOX_1 57 118 IPR001356 GO:0003677
Lan12g0607 308 CDD homeodomain 59 115 IPR001356 GO:0003677
Lan12g0607 308 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Lan12g0607 308 Coils Coil 113 168 - -
Lan12g0607 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 301 - -
Lan12g0607 308 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Lan12g0607 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 301 IPR045224 GO:0003700
Lan12g0607 308 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Lan12g0607 308 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0607 Lan-Chr12 12908720 12910908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0607 1 306 Homeobox Transcription Factor Family AT2G22430 47.561 1.69e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan12g0607 Homeodomain 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0607 K09338 - gmx:100796213 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0607 12 12908720 12910908 Lan3g1027 3 22585475 22588272 PCT