Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0606 ATGGATTTTCACAGTAGAAAACTGCTGCATCAGCATCATTACCATGCTTCCACCACTGCTGCTAGTCCAACACCTTCTCCTCTTGAATCACTGCCACAGAAGCCGGAACCATGGCTTCCTGTCTCCGATTTCATCGGTGGGGATTACATAACAAACCATAACCATGTTCACTTACTTCAAGTAGCTTTGATTGTTATGGCTTGCATGGTTGGCATGGTTATGTCTCTTTGCATCATTTCCTTAATCTTAAGGCACTATTACTCAAGAAGACTCAACCATAACAACAACAGAACAAGAAACTCGCCTATATTGTTCCATGTGAATGGAGACTCAGCTGTTGTTTCAGATAATGATGAGGGACCAATGGTTGAGCACCCTATATGGTTTATCCGCACAGAGGGTCTTCAACAATCATTGATAGATTCCATCACGGTTTTCAAATACAGAAAAGAAGAAGGGCTAATAGATGGGACAGTGTGTTCTGTTTGCCTCGGCGAGTTTGAACAACAAGAGAATTTAAGACTCTTGCCTAAGTGCAGCCACGCATTTCATATTCCTTGCATTGATACTTGGTTAAGATCACATAAGAATTGCCCCTTGTGTCGCGCACCCGTGGTTCATGATGGTGGTGCTAATGGTAGTAGAAGTGGTGGCACTGAGGTGAGTGCCACTGAGGCTAATGAGGAAGAAATAGGAACTAGTCATGTAGGAGAAAGTGAGAGTAGCACATTGAGGATTGAAAATGATGATTCAGAAGGGGATAGTGAAATTCCAGATAAGATGTTGCCTAATTCTGACAAGATAAATTTCCATGCTTTAGAAGTGGAAATACAACACATGATGAGGTCAGTGTCCATGGATTCTTCTTCTGCTCCAATGATATTTACTGATGTGGTGGGTCTAAAGTGTGATGTAGAAGGCTCACACACAAGCTTAGATGACAAAATCAATTCAGGTAACAAGGATATGCTTATTTCTAAGCAGGGTAGTGGCAGTGGAAGTTCAACTATTTACAAACAGACTTCAATTCAGCACGCATTCCAGAAAAAGCCTATTTCATTGAGAGGGTCTTTTTCACATAACACAAAATTGTTATTTTCTAGACATTGTAGGAGCCAGAGTTTAACCCTTCCCTTGTAA 1140 0.4123 MDFHSRKLLHQHHYHASTTAASPTPSPLESLPQKPEPWLPVSDFIGGDYITNHNHVHLLQVALIVMACMVGMVMSLCIISLILRHYYSRRLNHNNNRTRNSPILFHVNGDSAVVSDNDEGPMVEHPIWFIRTEGLQQSLIDSITVFKYRKEEGLIDGTVCSVCLGEFEQQENLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVVHDGGANGSRSGGTEVSATEANEEEIGTSHVGESESSTLRIENDDSEGDSEIPDKMLPNSDKINFHALEVEIQHMMRSVSMDSSSAPMIFTDVVGLKCDVEGSHTSLDDKINSGNKDMLISKQGSGSGSSTIYKQTSIQHAFQKKPISLRGSFSHNTKLLFSRHCRSQSLTLPL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0606 379 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 371 IPR044675 -
Lan12g0606 379 PANTHER RING-H2 FINGER PROTEIN ATL54 21 371 - -
Lan12g0606 379 MobiDBLite consensus disorder prediction 209 263 - -
Lan12g0606 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
Lan12g0606 379 SUPERFAMILY RING/U-box 141 208 - -
Lan12g0606 379 MobiDBLite consensus disorder prediction 242 261 - -
Lan12g0606 379 SMART ring_2 160 201 IPR001841 -
Lan12g0606 379 Pfam Ring finger domain 159 202 IPR001841 -
Lan12g0606 379 MobiDBLite consensus disorder prediction 215 229 - -
Lan12g0606 379 CDD RING-H2_PA-TM-RING 159 202 - -
Lan12g0606 379 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0606 Lan-Chr12 12891951 12893412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0606 64 254 C3H Transcription Factor Family AT1G72220 40.670 1.18e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0606 - - lja:Lj4g3v2731650.1 321.627