Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0597 ATGTTAGGTGGAGAAGAGGGTGATGACTCTGCCGGAGCTGGTCGTCGGAGAACTTATTCCCGGTCAGTTTCATGGACTGATCGAGCTCCGGCGAGCCGAAAGCCACCGAACAAGCCAAGGTCATTGTTGCCATCACTTCAACCACTTTCTATTAATAAACGCAGTGTTCAAGAGTGGCCAAGTGCTGGATCTGATGACCTTGGAGTTTGGCCACTTCCTCAAACTCCAAGAGGGTCAATCAGATCCACAGAACCAGGTGCTATGAAGGAGTTTCAGTTCAAGAGGGAGAAGCTGGCTTTCTATGACAAAGAGTGTTCTAGAATTGCTGAACATGTGTACCTTGGAAGTGATACAGTTGCAAAGAACCATGAGCTTTTGAGGCAGAATGGGATCACTCATGTTCTTAACTGTGTTGGTTTTGTTTGCCCTGAATATTTCAAGAGTGATTTTGTGTATAAAACTCTTTGGTTGCAGGATAGTCCAACTGAGGACATCACTAGTATTCTATATGATGTTTTTGATTACTTTGAGGATGTTAGGGAGCAAGGTGGGCGTGTCCTTGTTCATTGCTGCCAAGGGGTTTCGAGATCAACGTCGCTGGTGATTGCGTATATCATGTGGAGGGAGAGTCAGAGCTTTGAAGATGCTTTTCAGTATGTGAAGAATGCAAGAGGTGTCACCAATCCAAACATGGGTTTTGCTTGTCAATTGCTTCAGTGTCAGAAAAGGGTACATGCTATGCCTGCTAGTCCTAATTCTATTCTTAGGATGTATAGAGTTGCTCCTCATTCACCTTATGATCCTCTTCATTTGGTCCCTAAGATGGTTAACCAGCCATGTGCCCAAGCACTTGATTCTCGCGGCGCTTTTATTATCCATGTTCCGTCTGCTATATATGTCTGGACTGGTAAGAATTGCAACTGTGTCATGTCTTGTAATGCAAAATCGGCAGCTGATCAGGTCATACGTTATGAGAGGGCGAAAGGTCCAGTTCTTATGATCCATGAGGATGAGGAGCCACCAGATTTTTGGATTGCTCTTTCCAATGAACAATTATTATCAGGTACTTGTGATAAGGCAGAAGTCGAGAAGGATGCGGCATTGGCTTCTTCTGAAGGAATGGAGATTGATGATACAGTTGATAAGCAGATTCGTCCAAGGAAAGTGAATGAATATGATTTAGATTTTGAGATTTTTCACAAGGCACTTGCTGGTGGTGTTGTTCCACCTTTTTCTGTGTCTAATGCTGAATCAGAAACTTGCCTTCCCGCTAGAGAACACGGTTGGGGGAGACTGAGGAGGAAGCTTGCTAGTGGTCTCATGAAAGGATTGTTCCCAACCTGCAAAAACACAACCTCATCCAAAGATGAATCTTCCGTGATCATGGAAGAAGAAGAAGAAAAACAACACTCTGTTGTTGATCCTTCATCACCATCATCAAACCATCCTTGTGGTTCACCGGATTCGTTTGAATGTTTTCCAGATAACAGCTCAGACAGGGCAAAAGATACACTTGAAGTCATGGACCACTTTGTTCCTAGTGTTGATTTGTCCCTGCCACCGTCTCCTGGAGGAATGTCGGATTCCTATGCTTGTTTCCTTAGCAACAGCCCAAAACTCAGTTCCAAATCACCAACGCTTTCACCTTCAAGTTCTGATTATGCCAGTTCATTTACATTTTCACCTTCATCAACAAACTGGTCTTCTCGGCTGCCATCGCCTTCTAGCCTGGAATCAACTGAAGCCTTTTATGGTAAAGATGCATCTTTCTCAGATGGTTTCTTTTCACTTCAGAAAGAAGTCATCTCTCCACCTTCAGGGGCATCTTTGGCTAATCACACATTGGGAGGGGCAAACTTCTATTTTCCGAGCAAAGAATCTTCTTCGCCTTCCATTGCAGAGCGCCGAGGGAGTAATCTGCCACCTCGCATGGTGCTACCATCCGTCAATGAATCACCTCGTGCCCACAAGGTCTTGGTAAGATCACAGTCATTCTCTTTGCCTGACTTGGATGATAATTTGAATAATGATGTTAGTTTCAAACAATCTGATAAAGACAGTGGAAAATGGCTAAAGACAGATGCTGATATCATTCCTATAGCTGTTGAAAGCGAGAGCAATGACAGAGGATCATTGTAG 2139 0.4395 MLGGEEGDDSAGAGRRRTYSRSVSWTDRAPASRKPPNKPRSLLPSLQPLSINKRSVQEWPSAGSDDLGVWPLPQTPRGSIRSTEPGAMKEFQFKREKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTSLVIAYIMWRESQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRVAPHSPYDPLHLVPKMVNQPCAQALDSRGAFIIHVPSAIYVWTGKNCNCVMSCNAKSAADQVIRYERAKGPVLMIHEDEEPPDFWIALSNEQLLSGTCDKAEVEKDAALASSEGMEIDDTVDKQIRPRKVNEYDLDFEIFHKALAGGVVPPFSVSNAESETCLPAREHGWGRLRRKLASGLMKGLFPTCKNTTSSKDESSVIMEEEEEKQHSVVDPSSPSSNHPCGSPDSFECFPDNSSDRAKDTLEVMDHFVPSVDLSLPPSPGGMSDSYACFLSNSPKLSSKSPTLSPSSSDYASSFTFSPSSTNWSSRLPSPSSLESTEAFYGKDASFSDGFFSLQKEVISPPSGASLANHTLGGANFYFPSKESSSPSIAERRGSNLPPRMVLPSVNESPRAHKVLVRSQSFSLPDLDDNLNNDVSFKQSDKDSGKWLKTDADIIPIAVESESNDRGSL* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0597 712 CDD DSP 105 239 - -
Lan12g0597 712 Pfam Dual specificity phosphatase, catalytic domain 112 242 IPR000340 GO:0008138|GO:0016311
Lan12g0597 712 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 13 671 - -
Lan12g0597 712 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 163 224 IPR000387 GO:0016311|GO:0016791
Lan12g0597 712 MobiDBLite consensus disorder prediction 458 472 - -
Lan12g0597 712 MobiDBLite consensus disorder prediction 43 59 - -
Lan12g0597 712 Gene3D Severin 255 353 IPR029006 -
Lan12g0597 712 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 246 IPR029021 -
Lan12g0597 712 MobiDBLite consensus disorder prediction 448 496 - -
Lan12g0597 712 MobiDBLite consensus disorder prediction 1 83 - -
Lan12g0597 712 ProSitePatterns Tyrosine specific protein phosphatases active site. 188 198 IPR016130 GO:0016311|GO:0016791
Lan12g0597 712 PANTHER MKPA PROTEIN 13 671 - -
Lan12g0597 712 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 246 IPR020422 GO:0006470|GO:0008138
Lan12g0597 712 SMART dsp_5 104 243 IPR020422 GO:0006470|GO:0008138
Lan12g0597 712 Gene3D Protein tyrosine phosphatase superfamily 78 246 IPR029021 -
Lan12g0597 712 SUPERFAMILY Actin depolymerizing proteins 250 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0597 Lan-Chr12 12815309 12818431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0597 1 140 Protein tyrosine phosphatase (PTP) family AT3G55270 38.919 2.82e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0597 - - lja:Lj6g3v0574850.1 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0597 12 12815309 12818431 Lan3g1462 3 26181355 26183922 PCT