Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0580 ATGGCGTCGTTGAATGATCGTCTTGCTGATATCGATCTCTGGTTATCTACGCAGAGGCAACTTGTGTGTAGTGGTTGTCAGGGCATTTTGTTTTACCCTAGAGGGTCAGCAAATGTTTGTTGTGCAGTGTGCAACACAATTACCCTTGTTCCTCCACCGAATTTGGAAGTATGTCAACTTTTATGTGGAGAATGTAGGAGAATGCTAACATACGTATGTGGAGCTGCAAGTGTGAGTTGTTCCTCTTGCGGCACTGTAAACCGTGTGCCAGCATCTAATCAATTCACCTACATTGATTGTGGGAATTGTCGAACAACACTCATGTATTCTAATGGAGCTTCCTCTGTTAAATGCGCAATCTGTCACTATGTTACTGTTGTCAGTATGCCGAATGAAATGTTTCTATTTCCTGACTATAGTCCTAATGGAATGACCAACTCTGCAACAGTTTCTTCTACTTCAACATCAATGCCCCAATCTCCTAATCAAACTGTCATAGTAGAAAATCCAATGTCTATCGATTCAAATGGAAATTTGGTGAGCAATGTTGTTCTTGGAACTATAACCGACAAAAAATAA 579 0.4059 MASLNDRLADIDLWLSTQRQLVCSGCQGILFYPRGSANVCCAVCNTITLVPPPNLEVCQLLCGECRRMLTYVCGAASVSCSSCGTVNRVPASNQFTYIDCGNCRTTLMYSNGASSVKCAICHYVTVVSMPNEMFLFPDYSPNGMTNSATVSSTSTSMPQSPNQTVIVENPMSIDSNGNLVSNVVLGTITDKK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0580 192 PANTHER PROTEIN LSD1 18 189 IPR040319 -
Lan12g0580 192 Gene3D - 75 108 - -
Lan12g0580 192 PANTHER LSD1-LIKE PROTEIN 18 189 - -
Lan12g0580 192 SUPERFAMILY Multiheme cytochromes 29 123 IPR036280 -
Lan12g0580 192 Pfam LSD1 zinc finger 23 47 IPR005735 -
Lan12g0580 192 Pfam LSD1 zinc finger 100 124 IPR005735 -
Lan12g0580 192 Pfam LSD1 zinc finger 62 86 IPR005735 -
Lan12g0580 192 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 20 50 IPR005735 -
Lan12g0580 192 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 59 89 IPR005735 -
Lan12g0580 192 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 98 127 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0580 Lan-Chr12 12554326 12558161 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lan12g0580 zf-LSD1 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0580 - - lang:109338925 377.867