Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0579 ATGTTTGGGTTCAGAAAAGCACCACCCTCAAAGCCTGCTTCTGGTTCAGACAATGAATCGGAAAAGATGACAACCCTTACTCCAGATAGACGAACGGCTTCAGAACCTGTTGTGCTACCAAAATCTAAAGGAAACTATTTTGATGATGATGATGATGATGATGATTGGGGGAGAAAGCCTTCATCCACTGCATCCTCATCAGTCAGTTCAAAAGACAGGTATAAAAACGGTTTCCGTGACTCCGGAGGGCTAGAGAACCAAAGTGTTCAGGAGCTAGAAAACTATGCAGTGTACAAGTCTGAGGAGACAACAAATAGTGTTAACAATTGCCTGAGGATTGCTGAGAACATCAGAGAGGATGCCACAAAGACCATTGATATGTTGCACCAGCAGGGTGAGCAGATAACAAGGACTCACAATATGATTGTTGAAACAGAAAAAGATTTGAGTAAGGGTGAAAAACTCCTGAACAATCTTGGGGGCATGTTCTCTATGCCATGGAAGCCAAAGAAGACCCGCGAAATTCAAGGCCCTGTAATCACAGCAGATAAGGCATCCAAGAAGAATATAGGAAGTAAGGAAGACAGGGAAAAGTTGGGGTTAGCTCCTCTGCCTAAGGGGCGTTCTGCTCCTACTACACCTCCTAATGAATCAGCCAATGCCTATCAGAAAATTGATGTTGAGAAAGCCAAACAAGATGATGCACTCACAGACCTGAGTGATATCTTGGGCGATTTGAAGGGCATGGCAGTTAATATGGGAAGTGAACTTGACAGGCAAAACAAAGCTCTTGACCATCTTGACGCGGATGTGGATGAGATGAACTCTCGAGTTAAAGGTGCCAACCAGCGTGCACGCAAATTAGTAGGGTAG 873 0.4444 MFGFRKAPPSKPASGSDNESEKMTTLTPDRRTASEPVVLPKSKGNYFDDDDDDDDWGRKPSSTASSSVSSKDRYKNGFRDSGGLENQSVQELENYAVYKSEETTNSVNNCLRIAENIREDATKTIDMLHQQGEQITRTHNMIVETEKDLSKGEKLLNNLGGMFSMPWKPKKTREIQGPVITADKASKKNIGSKEDREKLGLAPLPKGRSAPTTPPNESANAYQKIDVEKAKQDDALTDLSDILGDLKGMAVNMGSELDRQNKALDHLDADVDEMNSRVKGANQRARKLVG* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0579 290 MobiDBLite consensus disorder prediction 187 202 - -
Lan12g0579 290 Coils Coil 257 284 - -
Lan12g0579 290 SUPERFAMILY SNARE fusion complex 87 158 - -
Lan12g0579 290 SUPERFAMILY SNARE fusion complex 219 288 - -
Lan12g0579 290 Gene3D - 83 161 - -
Lan12g0579 290 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 289 - -
Lan12g0579 290 MobiDBLite consensus disorder prediction 183 219 - -
Lan12g0579 290 CDD SNARE_Qc 229 287 - -
Lan12g0579 290 Gene3D - 212 290 - -
Lan12g0579 290 SMART tSNARE_6 221 288 IPR000727 -
Lan12g0579 290 SMART tSNARE_6 92 159 IPR000727 -
Lan12g0579 290 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 289 - -
Lan12g0579 290 MobiDBLite consensus disorder prediction 1 86 - -
Lan12g0579 290 CDD SNARE_SNAP25N_23N_29N_SEC9N 94 158 IPR044766 GO:0005484|GO:0031201
Lan12g0579 290 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0579 Lan-Chr12 12547230 12550431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0579 216 289 SNARE and Associated Proteins AT3G09740 39.189 8.24e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0579 K18211 - gmx:100804448 459.144