Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0575 ATGGTTTTTCCAAACCAATCCATGTTAGTTTCTGAGCAGAGAAAGATTAATGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACATCACAAATCGCCAAGTTACCTTTTGTAAGCGCAGAAATGGATTGCTGAAGAAGGCATATGAACTTTCTGTTCTTTGTGATGCAGAAGTTGCTCTAATAGTCTTCTCAAGTCGTGGTCGCCTCTATGAATATGCTAACAATAGTGTTAAAGCATCTATTGAAAGGTACAAGAAATCAAATTCAGATTCCTCTAGTGCTGGATCCACTTCTGAGGCTAATGCTCAGTTTTACCAACAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAACCTGCAGAATCATAACAGGCAAATGATGGGTGAGGCTTTGAGCCCTATGAATGCCAAGGAACTTAAAAGCCTTGAGACTAAATTAGAAAAGGGGATTAGCAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCAGAAATTGAATACATGCAAAAGAGGATAGCAGAAAGTGAGAGGAGCCATCATAACATTAATGTCTTACCTGGAGTTCCAAACTATGAATCTATGGAATTTCAGCAACAGTTTGACTCTCGTGGCTACTTCCAAGTTAATGGATTACAACCCAATAATCAGTATGGAAGGCAAGACCATATGTCCCTTCAATTAACGTAA 690 0.3957 MVFPNQSMLVSEQRKINGRGKIEIKRIENITNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKSNSDSSSAGSTSEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSPMNAKELKSLETKLEKGISRIRSKKNELLFAEIEYMQKRIAESERSHHNINVLPGVPNYESMEFQQQFDSRGYFQVNGLQPNNQYGRQDHMSLQLT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0575 229 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 PANTHER MADS BOX PROTEIN 15 223 - -
Lan12g0575 229 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 PANTHER AGAMOUSB 15 223 - -
Lan12g0575 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Lan12g0575 229 ProSiteProfiles K-box domain profile. 103 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan12g0575 229 Coils Coil 103 130 - -
Lan12g0575 229 Gene3D - 30 127 IPR036879 GO:0003677|GO:0046983
Lan12g0575 229 Coils Coil 140 160 - -
Lan12g0575 229 Pfam K-box region 99 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan12g0575 229 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Lan12g0575 229 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0575 Lan-Chr12 12509429 12515884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0575 11 229 MADS-box Gene Family AT3G58780 59.751 2.22e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan12g0575 K-box 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0575 K09264 - gmx:100790650 345.125