Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0571 ATGAAGTCTGTGACTATGTTTATGCTTCTGATCTTTGTCCTAGTTCCAATTCCAACCTCAGCAACAACCTCTCCAACCAACAATATATGTCCAGTGGACATGAATTATGTGCTAACAGTGCCTTGGAACTCCTCTAGTTGCCACAACTTCCAACCCTTAGCATCACAAAACCAAACACAGAATAGTTTTTGTTGCCAAACTCTTTTATCCCTCTTTGGCATAGCACTTTCACAAAATCTTAAGAAGAACTCTCTTTTTCAACTCCCTAACCTTTCTAGCTCCACCTCATGCCTTCAAGAGTTCCAGTCCAAGCTTAATTCCCTCTCACTTCCCAATAATCTTGTGTCCACTTGCTTTGATCCACTTCAGTTTGTTATCACTCCAAACATTTGTGCTCATATTCAAACCGAGCAAGATTGGCTAAGCAAGCTTGGTCCTACACCACCATTTGACACTGCATGTAAACCAGACCTTAGTGTTTCTTCTAATTGTGATGCATGTGTGAATGAAGGGCTCAAGGTGCTGCAGACATTGAATGCCATTGATGGTAATGCTTCACATTCCAAAGATTGTTTTTACTTCATAATACTTTATTCTGCTGGAGTTGTGAATGAGTTTGGGCCTGAAAGCAAAGGTGTTATGACTTGTAGTTTAGAGTTGCCACTTAATTCAGAAGAGGGTACCAAAAGAAAGGGCCATCATGCCCTTATATTTGAATTAACTGGAACATTAGTTGCATTCCTAGTAATCATTTTGTTAGGTTTGTATTTTTGGTACACAAGGTGGGTTAGGAGGAAAAAATGTACTGAAAACTTTGGATTCTATGCTGATTCAGAGGAACCAAGGAGGTTGAAACCAAAACCAAATTCAGGGTCAATTTGGTTCAAGCTTGAGGACCTTGACAAGGCCACAAACAAATTTTCACCACAAAACTTTATTGGTAGAGGTGGGTTTGGGGTAGTTTATAAGGGCATTATATCTGATGGCACAGTTGTTGCAGTTAAAAGGATTGAAGAATCTGATTCTCAAGGACATGCTGAGTTCTACCGCGAGGTGGAGATCATTAGCAACTTGAAGCACAGGAATCTTGTGCCCCTAAGAGGGTGTTGTGTGGTTGATGAGAATGATAATCCAGAGTACAAAACAAGAACTTATCTTGTTTATGATTATATGCCTAATGGAAGCCTTGAAGACCATCTTTTTCCACCAAAGGACAATACAAAAGCAAAGAAATTATCACTGACTTGGCCTCAAAGAAAAAACATAATCTTGGATGTTGCAAATGGGTTGGTTTATTTGCACTTTGGAGTTAAACCTGCTATTTATCATAGAGACATAAAAGCTACCAATATACTGCTTGATGAAGGTATGAGAGCAAAAGTTGCAGATTTTGGACTAGCCAAACAATGCAGTGAAAGTAGGTCTCAGCTAAATACTAGACTTGCTGGAACTCATGGATATCTAGCACCAGAATATGCACTTTATGGTCAACTTAGTGAAAAGTGTGATGTTTATAGCTTTGGTGTGGTTATTTTGGAGATAGTGTGTGGAAGAAAAGCTCTTGAAATTTCTTCATCTGGAACACCTGCTTTCTTGATCACAGATTGGGTTTGGTCATTGATGAAATCTGGAAAGTTAGAAGAAGCTTTTGATGCTTCTATCTTGGAAGATGGAAATGCTAATAGAAACATATTAGAGAGATTTTTGCTAGTTGGAATTCTTTCTTCTCATGTGGTTGTTGATTCAAGACCAACAATGTTGGATGCTTTGAAGATGTTAGAAGGGGATATTGAGGTTCCACCCATTCCAGATAGGCCTATGGCTCTTGGGCATAATATGTACTCCATTGCTGATTTCTATGTGAATATGTAA 1872 0.3884 MKSVTMFMLLIFVLVPIPTSATTSPTNNICPVDMNYVLTVPWNSSSCHNFQPLASQNQTQNSFCCQTLLSLFGIALSQNLKKNSLFQLPNLSSSTSCLQEFQSKLNSLSLPNNLVSTCFDPLQFVITPNICAHIQTEQDWLSKLGPTPPFDTACKPDLSVSSNCDACVNEGLKVLQTLNAIDGNASHSKDCFYFIILYSAGVVNEFGPESKGVMTCSLELPLNSEEGTKRKGHHALIFELTGTLVAFLVIILLGLYFWYTRWVRRKKCTENFGFYADSEEPRRLKPKPNSGSIWFKLEDLDKATNKFSPQNFIGRGGFGVVYKGIISDGTVVAVKRIEESDSQGHAEFYREVEIISNLKHRNLVPLRGCCVVDENDNPEYKTRTYLVYDYMPNGSLEDHLFPPKDNTKAKKLSLTWPQRKNIILDVANGLVYLHFGVKPAIYHRDIKATNILLDEGMRAKVADFGLAKQCSESRSQLNTRLAGTHGYLAPEYALYGQLSEKCDVYSFGVVILEIVCGRKALEISSSGTPAFLITDWVWSLMKSGKLEEAFDASILEDGNANRNILERFLLVGILSSHVVVDSRPTMLDALKMLEGDIEVPPIPDRPMALGHNMYSIADFYVNM* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0571 623 Pfam SPARK 26 192 IPR043891 -
Lan12g0571 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Lan12g0571 623 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 23 607 - -
Lan12g0571 623 CDD STKc_IRAK 313 595 - -
Lan12g0571 623 SUPERFAMILY Protein kinase-like (PK-like) 288 594 IPR011009 -
Lan12g0571 623 ProSiteProfiles Protein kinase domain profile. 307 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0571 623 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 607 - -
Lan12g0571 623 Gene3D Phosphorylase Kinase; domain 1 277 390 - -
Lan12g0571 623 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Lan12g0571 623 Pfam Protein kinase domain 310 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0571 623 Gene3D Transferase(Phosphotransferase) domain 1 391 599 - -
Lan12g0571 623 SMART serkin_6 307 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0571 Lan-Chr12 12470656 12472607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0571 19 616 Receptor kinase-like Gene Family AT1G11050 57.190 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lan12g0571 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0571 - - vra:106765729 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g1082 19 17963534 17966446 Lan12g0571 12 12470656 12472607 PCT
Lan16g0023 16 115647 118239 Lan12g0571 12 12470656 12472607 PCT