Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0560 ATGGAAATTCATTACAGTCAGAGTTACTTTGAAAGGCGTCCCATCATTAAATCTAAGGCTCCTGCAGTAAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCAACTGGGGGGAAGTGCTTGCTCTTAAGATGGGTAACAGAGGACACCTTAAAGGCATTGAAAGAAAAGGAAAAAGAACCATCAGTGCCTCAGACAGAACCAGAGCCAAATACTGAAGTCCTTTTTCTTTGCAGTTATGAAGGCTGCGGAAAAACATTTATAGATGCTGGTGCATTGAGGAAGCACTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAGGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACACTTTCTCATTCATACAGGGGAACGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTGAGGTCTCATATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACACAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCACGGAAAGAATCCATCAGTGGATGTGACTCCAGTGAGTCATGTGACAAAGTACACTCCAGCTTCAGAAAAGCAAACAAAAAATAAACATTCTGGAGGAGCATATGGTTCCACATCATCTGATCGCCCATACGCGTGTCCTTATGAAGGCTGTGAGAAAGCATACATCCATGAATACAAGCTGAAACTCCATTTGAAAAGGGAGCATCCCGAGCATAACGAACATGCCCAGGCTAATGCTGACAATGAAATAGATGATGAAGCAAGTGACCAAGATGCCTATAGTGGTGGGAAACGTTCAAATGGTAAAATCCAGAAGCAAAGTAAGCCGAAACCAAACCTGAAGTTGCCTCCATCAAAAGTTGCAAAACGCAAAGGGTCATCCACTCCCTCTATTGCCTCTTTAGCTGCTAGAGCTAAAAAACCTTGGCCTCTGAAACAGGAAACTTATGATGAGGAAGATAGTGAAGAAACAGAAGAGGATCGAGACAATGTTGAAGATGGTTGGAGATATGCAGGACACAACGAAGAAGATGATGAAGAAACAGAATATGAAGACTGA 1131 0.4218 MEIHYSQSYFERRPIIKSKAPAVKWVKEWVPQDVVATGGKCLLLRWVTEDTLKALKEKEKEPSVPQTEPEPNTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYTDCGKRYAHEYKLKNHIASHHGKNPSVDVTPVSHVTKYTPASEKQTKNKHSGGAYGSTSSDRPYACPYEGCEKAYIHEYKLKLHLKREHPEHNEHAQANADNEIDDEASDQDAYSGGKRSNGKIQKQSKPKPNLKLPPSKVAKRKGSSTPSIASLAARAKKPWPLKQETYDEEDSEETEEDRDNVEDGWRYAGHNEEDDEETEYED* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0560 376 MobiDBLite consensus disorder prediction 208 231 - -
Lan12g0560 376 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Lan12g0560 376 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lan12g0560 376 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Lan12g0560 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 264 IPR013087 -
Lan12g0560 376 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Lan12g0560 376 Gene3D Classic Zinc Finger 206 278 - -
Lan12g0560 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lan12g0560 376 Gene3D Classic Zinc Finger 103 133 - -
Lan12g0560 376 SUPERFAMILY beta-beta-alpha zinc fingers 160 195 IPR036236 -
Lan12g0560 376 SMART c2h2final6 166 190 IPR013087 -
Lan12g0560 376 SMART c2h2final6 234 259 IPR013087 -
Lan12g0560 376 SMART c2h2final6 77 101 IPR013087 -
Lan12g0560 376 SMART c2h2final6 136 160 IPR013087 -
Lan12g0560 376 SMART c2h2final6 106 130 IPR013087 -
Lan12g0560 376 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Lan12g0560 376 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Lan12g0560 376 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lan12g0560 376 MobiDBLite consensus disorder prediction 208 228 - -
Lan12g0560 376 Gene3D Classic Zinc Finger 162 192 - -
Lan12g0560 376 PANTHER BNAA03G13270D PROTEIN 4 376 - -
Lan12g0560 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Lan12g0560 376 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Lan12g0560 376 MobiDBLite consensus disorder prediction 284 298 - -
Lan12g0560 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Lan12g0560 376 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 376 - -
Lan12g0560 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lan12g0560 376 SUPERFAMILY beta-beta-alpha zinc fingers 229 258 IPR036236 -
Lan12g0560 376 Gene3D Classic Zinc Finger 134 161 - -
Lan12g0560 376 Gene3D Classic Zinc Finger 77 102 - -
Lan12g0560 376 MobiDBLite consensus disorder prediction 261 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0560 Lan-Chr12 12339369 12343530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0560 7 362 C2H2 Transcription Factor Family AT4G06634 64.021 8.25e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan12g0560 zf-C2H2 0.00038 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0560 12 12339369 12343530 Lan1g1790 1 32598068 32602698 LSH