Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0557 ATGGAAAGCATTGCCGCGCAGTTGAAGCGCGGCATATCCCGCCAATTCTCGTCAGGTGGCGGCGCATCTATGCGTCGCCACCTGAGCAGACAGTTTACGCGCCAGTCCTCGCTGGACCCCAGACGTAACAGCCTGAGGTTCAGCTTTGGAAGGCAGTCGTCGCTCGATCCGATTCGTCGTGGGAGTCCTACGCCGGATCACATCGAGCTGACGGTGCCGGAGAATTTGGACTCGACGATGCAGCTGCTGTTCATGGCGTGCAGGGGGGACATGAAGGGAGTAGAGGATTTGTTGAACGAGGGCATTGACGTAAATAGCATCGACCTTGATGGCCGTACAGCTCTTCACGTTGCTGCTTGTGAGGGACATGTTGAGGTTGCAAGGCTCTTACTTTCTCGTAAGGTCAATATCGATGCTCGTGATCGCTGGGGCAGTACGGCAGCAGCTGATGCCAAGCATTATGGAAATTCAGAAATTTATTATATGCTGAAGGCCCGTGGAGCAAAAGTGCCGAAAGCCAAGAAGACTCCAATGACTGTTGCAAATCCACGTGAAGTTCCAGAATATGAACTCAATCCATTAGAACTCCAGGTCAGGAAGAGTGATGGTATTTCAAAGGGTACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTTCAGTGAAGATACTCGATAAGGACAGTTATTCAGATCCTGATAGCATAGATGTCTTCAAACACGAGCTTACATTATTAGAAAGGGTACGGCATCCTAATGTGGTTCAGTTTGTTGGAGCTGTCACCCAAAATATACCTATGATGATTGTTAGAGAATATCATGCTAAGGGTGACCTAGCAAGCTATCTTCAAAAGAAAGGCCGTCTTTCCCCATCAAAAGCTCTACGATTTGCTCTTGATATTGCCAGGGGAATGAACTATCTGCATGAATGCAAACCAGATCCAATTACCCACTGTTGCTTAACGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAGATAGCTGGATTTGGCAATGTGAGATTAACACAAATGTCATCTGATAAAGTAAGGCTGGTACAGCCAGAGGCTAATGTTAACCTTTCAAATTTGTACTTGGCACCGGAGATTTACAAAGGTGGAGAATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTCATTATATATGAGATGATAGAAGGGACACAGCCCTTTCACCCCAAGTCCGCTGAGGAGGCTGCGAAACTCATGTGCTTAGAAGGGAAAAGACCAACGTTCAAGATCAAAACCAAACATTATCCTCCGGATTTGAAAGAATTGATTGAGGAATGCTGGGATTCAGAGCCTGTTGTCAGGCCAACATTTTCACAGGTCATTGTACGGTTGGACAAAATTGTTGCAAATTGTGCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCTTGGAAATAA 1440 0.4542 MESIAAQLKRGISRQFSSGGGASMRRHLSRQFTRQSSLDPRRNSLRFSFGRQSSLDPIRRGSPTPDHIELTVPENLDSTMQLLFMACRGDMKGVEDLLNEGIDVNSIDLDGRTALHVAACEGHVEVARLLLSRKVNIDARDRWGSTAAADAKHYGNSEIYYMLKARGAKVPKAKKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVSVKILDKDSYSDPDSIDVFKHELTLLERVRHPNVVQFVGAVTQNIPMMIVREYHAKGDLASYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPITHCCLTPKNILLDNGGQLKIAGFGNVRLTQMSSDKVRLVQPEANVNLSNLYLAPEIYKGGEFDRSVDAYSFGLIIYEMIEGTQPFHPKSAEEAAKLMCLEGKRPTFKIKTKHYPPDLKELIEECWDSEPVVRPTFSQVIVRLDKIVANCAKQGWWKDTFKLPWK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0557 479 ProSiteProfiles Protein kinase domain profile. 194 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0557 479 Pfam Ankyrin repeats (3 copies) 84 170 IPR002110 GO:0005515
Lan12g0557 479 Gene3D Phosphorylase Kinase; domain 1 191 273 - -
Lan12g0557 479 SUPERFAMILY Protein kinase-like (PK-like) 209 457 IPR011009 -
Lan12g0557 479 ProSiteProfiles Ankyrin repeat region circular profile. 110 142 - -
Lan12g0557 479 MobiDBLite consensus disorder prediction 15 39 - -
Lan12g0557 479 SUPERFAMILY Ankyrin repeat 79 180 IPR036770 -
Lan12g0557 479 ProSiteProfiles Ankyrin repeat profile. 110 142 IPR002110 GO:0005515
Lan12g0557 479 PIRSF ILK 8 478 - -
Lan12g0557 479 Gene3D - 62 189 IPR036770 -
Lan12g0557 479 Gene3D Transferase(Phosphotransferase) domain 1 274 473 - -
Lan12g0557 479 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 35 477 - -
Lan12g0557 479 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 35 477 - -
Lan12g0557 479 SMART ANK_2a 78 106 IPR002110 GO:0005515
Lan12g0557 479 SMART ANK_2a 110 139 IPR002110 GO:0005515
Lan12g0557 479 Pfam Protein tyrosine and serine/threonine kinase 204 456 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0557 Lan-Chr12 12293384 12299575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0557 1 478 MAP Kinase Kinase Kinase AT2G43850 74.636 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Lan12g0557 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0557 12 12293384 12299575 Lan1g0491 1 5592018 5598271 LSH