Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0554 ATGGGTAATTGCTGGTGTAAGTTGGAACCATCAGATTATAGAGTCTCAGCCAATGCAAAGTCAGAGCAAAACCAGGAAATCAAACAAAGGAATGATGATAATAAGTTACCATCTAACCCTGAAGAAGTAGAAGACCTACGTGGCAATTCAGCTTTGAATCCATTGATTGCATTCACTTATGATGAATTAAAGATAATGACTGGAAATTTTAGGCCAGATAGTGTATTGGGAGGAGGAGGATTTGGAAGTGTTTATAAAGGCTTTATTTCTGAGGAGTTAAGGGAAGGACTTTCTTCTCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGGCATAGAGAATGGCTGGCAGAAGTTATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAGTTGATTGGATACTGCTGTGAAGATGAACATAGGGTGCTAATATATGAGTATATGGCTAGGGGAAGTGTAGAGAACAATTTGTTCTCAAAAATATTGCTTCCTATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAAAAACCTGTCATATATCGTGATTTTAAGACATCAAATATTTTATTGGACCTGGAGCATAATGCAAAACTTTCTGACTTTGGCCTTGCCAAAGATGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGCATAATGGGAACATATGGGTATGCTGCACCTGAATACATAATGACAGGTCATTTAACCCCTAGAAGTGATGTTTACAGTTTCGGTGTTGTTCTTCTTGAACTTCTCACCGGGAGAAAATCCTTAGACAGGTTAAGACCTGCTAGAGAGCAGAACTTAGCAGATTGGGCTCTTCCCTTGCTGAAGGAAAAGAAGAAACTGCTAAATATTATAGATCCAAGGCTGGAAGGTGATTATCCAATAAAAGGAGTTCACAAAGCTGCAATGCTTGTTTATCATTGCTTGAACCGCAATCCGAAAGCACGGCCTCTAATGCGAGATATAGTAGATTCATTGGAGCCTTTGCAGCAACCAACCAATGAGGTCTCTATTGAAAAAACATTCACCATAATCAATGAGGTTCCTGAAGCAGATGTATAA 1128 0.3954 MGNCWCKLEPSDYRVSANAKSEQNQEIKQRNDDNKLPSNPEEVEDLRGNSALNPLIAFTYDELKIMTGNFRPDSVLGGGGFGSVYKGFISEELREGLSSLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVENNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDLEHNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDRLRPAREQNLADWALPLLKEKKKLLNIIDPRLEGDYPIKGVHKAAMLVYHCLNRNPKARPLMRDIVDSLEPLQQPTNEVSIEKTFTIINEVPEADV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0554 375 MobiDBLite consensus disorder prediction 25 42 - -
Lan12g0554 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lan12g0554 375 MobiDBLite consensus disorder prediction 17 43 - -
Lan12g0554 375 PANTHER OS01G0588500 PROTEIN-RELATED 10 359 - -
Lan12g0554 375 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 359 - -
Lan12g0554 375 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Lan12g0554 375 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0554 375 SUPERFAMILY Protein kinase-like (PK-like) 46 348 IPR011009 -
Lan12g0554 375 Gene3D Phosphorylase Kinase; domain 1 33 153 - -
Lan12g0554 375 Pfam Protein tyrosine and serine/threonine kinase 74 348 IPR001245 GO:0004672|GO:0006468
Lan12g0554 375 Gene3D Transferase(Phosphotransferase) domain 1 154 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0554 Lan-Chr12 12249837 12260582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0554 23 363 Glycoside Hydrolase AT3G07070 46.322 3.24e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan12g0554 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0554 - - gmx:100775722 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0554 12 12249837 12260582 Lan1g0495 1 5660412 5666740 LSH